RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 HCP5Q6MZN7 132 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 C16orf82Q7Z2V1 217 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 FAM220AQ7Z4H9 259 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 SLC35F2Q8IXU6 374 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 ELMOD2Q8IZ81 293 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 OR8H2Q8N162 312 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 NDNFQ8TB73 568 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 CREB3L1Q96BA8 519 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 C10orf35Q96D05 121 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 BORCS8Q96FH0 119 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 CEP19Q96LK0 163 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 MYCBPQ99417 103 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-213ENST00000493475 CLN6Q9NWW5 311 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 V9GYS6 101 aa9.38□□□□□ -0.91
COL6A3-213ENST00000493475 FAM90A8PA6NJQ4 464 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 SYT7O43581 403 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 SYNGR1O43759 233 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 FKBP6O75344 327 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 IGLV3-1P01715 115 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 IGHV1-8P0DP01 117 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 PF4V1P10720 104 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 CD33P20138 364 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 BRS3P32247 399 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 FUT6P51993 359 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 LOXL3P58215 753 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 COL10A1Q03692 680 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 PTGES3Q15185 160 aaKnown RBP9.37□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM236Q5W0B7 351 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF626Q68DY1 528 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM42Q69YG0 159 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 TRAPPC6BQ86SZ2 158 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 Q8N2B8 174 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF676Q8N7Q3 588 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 YIPF7Q8N8F6 280 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 OR11H6Q8NGC7 330 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 C17orf50Q8WW18 174 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 SNX22Q96L94 193 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF488Q96MN9 340 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 GAL3ST2Q9H3Q3 398 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 HES4Q9HCC6 221 aa9.37□□□□□ -0.91
COL6A3-213ENST00000493475 CHST1O43916 411 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 PF4P02776 101 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 UBCP0CG48 685 aaKnown RBP9.36□□□□□ -0.91
COL6A3-213ENST00000493475 PRKACGP22612 351 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 GABRR1P24046 479 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 CEACAM3P40198 252 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ACTA2P62736 377 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ACTG2P63267 376 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ACTC1P68032 377 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ACTA1P68133 377 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 MFGE8Q08431 387 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-213ENST00000493475 EDDM3AQ14507 147 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF273Q14593 569 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 DMRTC1Q5HYR2 192 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 CRIP3Q6Q6R5 217 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM179BQ7Z7N9 219 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ZDHHC13Q8IUH4 622 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 EGFL6Q8IUX8 553 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 OR14K1Q8NGZ2 314 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 TRMT10AQ8TBZ6 339 aaKnown RBP9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF596Q8TC21 504 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM163Q8TC26 289 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 PP6455Q8WZ26 134 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 EMG1Q92979 244 aaKnown RBP9.36□□□□□ -0.91
COL6A3-213ENST00000493475 STMN2Q93045 179 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 RFKQ969G6 155 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 CLEC7AQ9BXN2 247 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 TTTY10Q9BZA0 68 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 GPR61Q9BZJ8 451 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 ZNF702PQ9H963 129 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 WARS2Q9UGM6 360 aaKnown RBP9.36□□□□□ -0.91
COL6A3-213ENST00000493475 LINC00312Q9Y6C7 94 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 SESN1Q9Y6P5 492 aa9.36□□□□□ -0.91
COL6A3-213ENST00000493475 TRGV10A0A0A0MS01 117 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 A6NDX4 124 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 CCDC182A6NF36 153 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 ODF3BA8MYP8 253 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 SULT1C4O75897 302 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 RPP14O95059 124 aaKnown RBP9.35□□□□□ -0.91
COL6A3-213ENST00000493475 DUS4LO95620 317 aaKnown RBP9.35□□□□□ -0.91
COL6A3-213ENST00000493475 OR2T7P0C7T2 308 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 PRKACBP22694 351 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 HTR1DP28221 377 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 CEBPDP49716 269 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-213ENST00000493475 RBP2P50120 134 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 ATP1B3P54709 279 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 GYS2P54840 703 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 CDC42P60953 191 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 SLC35A2P78381 396 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 GRK1Q15835 563 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 PLEKHG7Q6ZR37 379 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 LHFPL4Q7Z7J7 247 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 CENPVQ7Z7K6 275 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-213ENST00000493475 RTN4RL2Q86UN3 420 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 ANGPTL5Q86XS5 388 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 TMEM219Q86XT9 240 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 HS3ST5Q8IZT8 346 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 TCEANCQ8N8B7 351 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 OR4X2Q8NGF9 303 aa9.35□□□□□ -0.91
COL6A3-213ENST00000493475 DPF1Q92782 380 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms