RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 MICBQ29980 383 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 C2orf76Q3KRA6 126 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 NHLRC3Q5JS37 347 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SPIN3Q5JUX0 258 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 TEX36Q5VZQ5 186 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 MZT2AQ6P582 158 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 CLEC2AQ6UVW9 174 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 ACP7Q6ZNF0 438 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 LINC00596Q86U02 117 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 OSR2Q8N2R0 312 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 MUC20Q8N307 709 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-221ENST00000489562 EMG1Q92979 244 aaKnown RBP11.67□□□□□ -0.54
C9orf3-221ENST00000489562 BARHL1Q9BZE3 327 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 SEBOXQ9HB31 216 aaPredicted RBP11.67□□□□□ -0.54
C9orf3-221ENST00000489562 HMG20AQ9NP66 347 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 RBFOX1Q9NWB1 397 aaKnown RBP11.67□□□□□ -0.54
C9orf3-221ENST00000489562 GLS2Q9UI32 602 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 PPIAL4AQ9Y536 164 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 POLQO75417 2590 aa11.67□□□□□ -0.54
C9orf3-221ENST00000489562 DOCK11Q5JSL3 2073 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 OOEPA6NGQ2 149 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 TMEM14DPA8MWL7 114 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 LYNX1G3V0Z9 82 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 H3BUI4 141 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.66□□□□□ -0.54
C9orf3-221ENST00000489562 LDLRAD4O15165 306 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 CRTAPO75718 401 aaPredicted RBP11.66□□□□□ -0.54
C9orf3-221ENST00000489562 KNG1P01042 644 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 LYNX1P0DP58 116 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 MGMTP16455 207 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 PRKACAP17612 351 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 EGR1P18146 543 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 RAB6AP20340 208 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 MDH2P40926 338 aaKnown RBP11.66□□□□□ -0.54
C9orf3-221ENST00000489562 BTG1P62324 171 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 QRFPP83859 136 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 IL13RA2Q14627 380 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 CARTPTQ16568 116 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 PRSS57Q6UWY2 283 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 TGIF2LYQ8IUE0 185 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 ZNF525Q8N782 197 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 BOLLQ8N9W6 283 aaKnown RBP11.66□□□□□ -0.54
C9orf3-221ENST00000489562 OR51T1Q8NGJ9 327 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 FAM168AQ92567 244 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 ZNF488Q96MN9 340 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 URM1Q9BTM9 101 aaKnown RBP11.66□□□□□ -0.54
C9orf3-221ENST00000489562 TMEM59Q9BXS4 323 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 NLKQ9UBE8 527 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 OR5V1Q9UGF6 321 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 RAB22AQ9UL26 194 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 SPATA2Q9UM82 520 aa11.66□□□□□ -0.54
C9orf3-221ENST00000489562 TMEM272A0A1B0GTI8 110 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A10PA6NDY2 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A18PA6NE21 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A16PA6NEW6 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A20PA6NIJ5 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A8PA6NJQ4 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A7PA6NKC0 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A22PA8MWA6 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A12PA8MX19 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A5PA8MXJ8 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A23PA8MXZ1 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 F8VVB4 439 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 F8VWA3 439 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 WNT9BO14905 357 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 PPIHO43447 177 aaKnown RBP11.65□□□□□ -0.54
C9orf3-221ENST00000489562 NDUFA2O43678 99 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 IGHV2-70P01814 119 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A15PP0C7V4 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A13PP0C7W8 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A14PP0C7W9 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 FAM90A24PP0C7X0 464 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 SNRPBP14678 240 aaKnown RBP11.65□□□□□ -0.54
C9orf3-221ENST00000489562 CPT2P23786 658 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 CD80P33681 288 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 GPR6P46095 362 aaPredicted RBP11.65□□□□□ -0.54
C9orf3-221ENST00000489562 RBM11P57052 281 aaKnown RBP11.65□□□□□ -0.54
C9orf3-221ENST00000489562 UNC119Q13432 240 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 ZNF146Q15072 292 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 MPV17LQ2QL34 196 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 OR10K1Q8NGX5 313 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 LGALS14Q8TCE9 139 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 CMTM3Q96MX0 182 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 PIMREGQ9BSJ6 248 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 DCUN1D5Q9BTE7 237 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 DNTTIP1Q9H147 329 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 WDR13Q9H1Z4 485 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 DCAF16Q9NXF7 216 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 A3GALT2U3KPV4 340 aa11.65□□□□□ -0.54
C9orf3-221ENST00000489562 ITPR2Q14571 2701 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 A0A075B6Q4 140 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 A0A0B4J203 849 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 OR2AT4A6NND4 320 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 C3orf80F5H4A9 247 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 SCGNO76038 276 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 MPIG6BO95866 241 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 PAHP00439 452 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 GMFBP60983 142 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 RPS27AP62979 156 aaKnown RBP11.64□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF404Q494X3 552 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms