RNA–Protein interactions for RNA: ENST00000489442.5

CCL28-202, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 1 (best)

Gene CCL28, Length 1,342 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-202ENST00000489442 MAGEB3O15480 346 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 MMP9P14780 707 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 SOX2P48431 317 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 ERVK11-1P61568 191 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 BAMBIQ13145 260 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 CDK5R1Q15078 307 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 AHSA2Q719I0 299 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 VMO1Q7Z5L0 202 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 PDZD9Q8IXQ8 264 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 FAM185AQ8N0U4 392 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 ASCC1Q8N9N2 400 aaKnown RBP11.04□□□□□ -0.64
CCL28-202ENST00000489442 OR52N1Q8NH53 320 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 GPR148Q8TDV2 347 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 EMG1Q92979 244 aaKnown RBP11.04□□□□□ -0.64
CCL28-202ENST00000489442 RFT1Q96AA3 541 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 SPACA5Q96QH8 159 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 SIRPDQ9H106 197 aa11.04□□□□□ -0.64
CCL28-202ENST00000489442 ELL3Q9HB65 397 aaPredicted RBP11.04□□□□□ -0.64
CCL28-202ENST00000489442 TRBV23-1A0A0A0MS06 115 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 CENPVL3A0A0U1RRI6 287 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 A0A1W2PPH5 198 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 H0YJX3 145 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 MYL12BO14950 172 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 SPRY1O43609 319 aaPredicted RBP11.03□□□□□ -0.64
CCL28-202ENST00000489442 SULT1B1O43704 296 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 MT-ND2P03891 347 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 CHRM2P08172 466 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 PIPP12273 146 aaPredicted RBP11.03□□□□□ -0.64
CCL28-202ENST00000489442 AQP4P55087 323 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 ACTG1P63261 375 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 PDZK1IP1Q13113 114 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 RUSC1-AS1Q66K80 236 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 XAF1Q6GPH4 301 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 C9orf139Q6ZV77 190 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 FAM58AQ8N1B3 248 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 PARP16Q8N5Y8 322 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 KIR3DL3Q8N743 410 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 C8orf46Q8TAG6 207 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 NRG4Q8WWG1 115 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 SIRT7Q9NRC8 400 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 PLCXD1Q9NUJ7 323 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 SCN3BQ9NY72 215 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 GLS2Q9UI32 602 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 PSORS1C1Q9UIG5 152 aa11.03□□□□□ -0.64
CCL28-202ENST00000489442 IGHV1-69DA0A0B4J2H0 117 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 PTGES3LE9PB15 166 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 F8VVB4 439 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 F8VWA3 439 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 IGHV1-69P01742 117 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 TK1P04183 234 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 TMEM225BP0DP42 221 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 PRKACAP17612 351 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 RAB3AP20336 220 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 BCL3P20749 454 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 EEF1B2P24534 225 aaKnown RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 SNU13P55769 128 aaKnown RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 RPL31P62899 125 aaKnown RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 COL10A1Q03692 680 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 SATL1Q86VE3 508 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 OR4M1Q8NGD0 313 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 OR5D18Q8NGL1 313 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 TBC1D15Q8TC07 691 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 FAM216AQ8WUB2 273 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 FBLIM1Q8WUP2 373 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 SMIM19Q96E16 107 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 CPNE2Q96FN4 548 aaPredicted RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 DUX5Q96PT3 197 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 GPER1Q99527 375 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 FAM234AQ9H0X4 552 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 ESM1Q9NQ30 184 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 RBFOX1Q9NWB1 397 aaKnown RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 ERGIC3Q9Y282 383 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 ZNF281Q9Y2X9 895 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 PCDHGB5Q9Y5G0 923 aa11.02□□□□□ -0.65
CCL28-202ENST00000489442 SOX21Q9Y651 276 aaPredicted RBP11.02□□□□□ -0.65
CCL28-202ENST00000489442 TENM1Q9UKZ4 2725 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 KIAA2026Q5HYC2 2103 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 DSCAML1Q8TD84 2053 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 hCG_1809904A0A1W2PP81 198 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 A0A1W2PPE2 198 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 A0A1W2PR64 198 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 A0A1W2PRV1 198 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 K7N7A8 449 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 M0R1W7 72 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 OGG1O15527 345 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 ANGPTL7O43827 346 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 ALX3O95076 343 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 CALCBP10092 127 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 PRTN3P24158 256 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 C21orf33P30042 268 aaPredicted RBP11.01□□□□□ -0.65
CCL28-202ENST00000489442 NPBWR2P48146 333 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 TAS2R43P59537 309 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 UBA52P62987 128 aaKnown RBP11.01□□□□□ -0.65
CCL28-202ENST00000489442 PPP3R1P63098 170 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 GUCA2AQ02747 115 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 KISS1Q15726 138 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 DEFB112Q30KQ8 113 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 C6orf141Q5SZD1 244 aa11.01□□□□□ -0.65
CCL28-202ENST00000489442 LAIR2Q6ISS4 152 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms