RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, human

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR3-208	ENST00000474426	AWAT1	Q58HT5	328 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	ZNF776	Q68DI1	518 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	AGTRAP	Q6RW13	159 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ARL9	Q6T311	187 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ACOT1	Q86TX2	421 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	DTX2	Q86UW9	622 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	TMEM178A	Q8NBL3	297 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR2T12	Q8NG77	320 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR1B1	Q8NGR6	318 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NEIL3	Q8TAT5	605 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	RND1	Q92730	232 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	HIST1H2BH	Q93079	126 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	LRRC58	Q96CX6	371 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ERMAP	Q96PL5	475 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	HIST1H2BN	Q99877	126 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	HIST1H2BM	Q99879	126 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	DERL1	Q9BUN8	251 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	PELI2	Q9HAT8	420 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NMRAL1	Q9HBL8	299 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	KCNK9	Q9NPC2	374 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	BABAM1	Q9NWV8	329 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IL36G	Q9NZH8	169 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	KDM3B	Q7LBC6	1761 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IQGAP3	Q86VI3	1631 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	TSPOAP1	O95153	1857 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	TRAV36DV7	A0A075B6V5	113 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NSG1	A0A0A6YYJ2	146 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IDS	B3KWA1	339 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	PLPP1	O14494	284 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	LDB3	O75112	727 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	MMP7	P09237	267 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR4Q2	P0C623	313 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	HOXB4	P17483	251 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	PRPH2	P23942	346 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NSG1	P42857	185 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	KLK7	P49862	253 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	GNG5	P63218	68 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	SLC35B1	P78383	322 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	GUSBP1	Q15486	140 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	SNRNP35	Q16560	246 aa	Known RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	CR1L	Q2VPA4	569 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CLEC12A	Q5QGZ9	265 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	SHC4	Q6S5L8	630 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IL34	Q6ZMJ4	242 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	MARCH9	Q86YJ5	346 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR5A2	Q8NGI9	324 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	TMEM171	Q8WVE6	324 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NDRG1	Q92597	394 aa	Known RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	FRZB	Q92765	325 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	S100A13	Q99584	98 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CHIA	Q9BZP6	476 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	C11orf54	Q9H0W9	315 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	SLC52A3	Q9NQ40	469 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	SIGLEC8	Q9NYZ4	499 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ARMCX1	Q9P291	453 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	KIF21B	O75037	1637 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CUX1	P39880	1505 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	FAM183A	A6NL82	134 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	USP17L23	D6RBM5	183 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	MFNG	O00587	321 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR7A17	O14581	309 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	AGPAT2	O15120	278 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	NKX2-8	O15522	239 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CLDN11	O75508	207 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CA1	P00915	261 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	VTN	P04004	478 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IGF1	P05019	195 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CT45A6	P0DMU7	189 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CT45A5	P0DMU8	189 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CT45A7	P0DMV0	189 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	FCAR	P24071	287 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	P2RY1	P47900	373 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	MFAP5	Q13361	173 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	RTP5	Q14D33	572 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IAH1	Q2TAA2	248 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	CT45A1	Q5HYN5	189 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ALG10B	Q5I7T1	473 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	ZNF549	Q6P9A3	640 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	PPP1R32	Q7Z5V6	425 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	IGDCC3	Q8IVU1	814 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR13A1	Q8NGR1	328 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OR1L8	Q8NGR8	309 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CT45A3	Q8NHU0	189 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	OVCA2	Q8WZ82	227 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	PCED1B	Q96HM7	432 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	DIRAS2	Q96HU8	199 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CIB3	Q96Q77	187 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	LYSMD1	Q96S90	227 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	WNT10A	Q9GZT5	417 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	TAF9B	Q9HBM6	251 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	SLC25A19	Q9HC21	320 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	FGF20	Q9NP95	211 aa	Predicted RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	MBNL3	Q9NUK0	354 aa	Known RBP	3	□□□□□ -1.93
UBR3-208	ENST00000474426	RAI2	Q9Y5P3	530 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	FLVCR1	Q9Y5Y0	555 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	CDC42BPB	Q9Y5S2	1711 aa		3	□□□□□ -1.93
UBR3-208	ENST00000474426	GAGE12J	A6NER3	117 aa		2.99	□□□□□ -1.93
UBR3-208	ENST00000474426		J3QR06	171 aa		2.99	□□□□□ -1.93
UBR3-208	ENST00000474426		M0QYG6	137 aa		2.99	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms