RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 NKX2-4Q9H2Z4 354 aa5.36□□□□□ -1.55
HERC4-209ENST00000473533 IGKV1-9A0A0C4DH69 117 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TRBV11-1A0A0K0K1C0 115 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF587BE7ETH6 402 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PPP1R2P9O14990 202 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 RER1O15258 196 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 CLN5O75503 358 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 IGHV2-70P01814 119 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 EFNA3P52797 238 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 HIST1H3AP68431 136 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 EWSR1Q01844 656 aaKnown RBP eCLIP5.35□□□□□ -1.556e-7■■■□□ 16.8
HERC4-209ENST00000473533 HGFACQ04756 655 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 DLX2Q07687 328 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 LBHQ53QV2 105 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 WDR74Q6RFH5 385 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF695Q8IW36 515 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 CADM4Q8NFZ8 388 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 OR2G3Q8NGZ4 309 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZDHHC19Q8WVZ1 309 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 IL22RA2Q969J5 263 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TMEM54Q969K7 222 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TOMM40LQ969M1 308 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PIGQQ9BRB3 760 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 RCL1Q9Y2P8 373 aaKnown RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 IGHV1OR21-1A0A087WYE8 117 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF732B4DXR9 585 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 IFNA5P01569 189 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 OR5AC1P0C628 307 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 OR8U8P0C7N1 319 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 SPTBP11277 2137 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 CEACAM1P13688 526 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PCBD1P61457 104 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 SMAD4Q13485 552 aaKnown RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF506Q5JVG8 444 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ASCL4Q6XD76 172 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TMEM182Q6ZP80 229 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 SYT13Q7L8C5 426 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 SPRED2Q7Z698 418 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF100Q8IYN0 542 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 C1orf87Q8N0U7 546 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 OR2M3Q8NG83 312 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 NUDT22Q9BRQ3 303 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 RSRP1Q9BUV0 290 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF700Q9H0M5 742 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 SLC2A9Q9NRM0 540 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 FGF21Q9NSA1 209 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 UFSP2Q9NUQ7 469 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TMEM242Q9NWH2 141 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 AK3Q9UIJ7 227 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 UBE2J1Q9Y385 318 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 FBXO7Q9Y3I1 522 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 TSTD3H0UI37 97 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PHF1O43189 567 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 DHHO43323 396 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 NDUFS6O75380 124 aaKnown RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 FOSL1P15407 271 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 CBR1P16152 277 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 LMO1P25800 156 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 OTX1P32242 354 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 HTR5AP47898 357 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 FUT6P51993 359 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 LBX1P52954 281 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 CLDN17P56750 224 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 HYAL1Q12794 435 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 IL24Q13007 206 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ZNF674Q2M3X9 581 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 ACSF3Q4G176 576 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 CARD17Q5XLA6 110 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 Q6ZS49 121 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 DPPA2Q7Z7J5 298 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 STX12Q86Y82 276 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PRSS58Q8IYP2 241 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 MAML2Q8IZL2 1156 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 OSR2Q8N2R0 312 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 NFAM1Q8NET5 270 aaPredicted RBP5.35□□□□□ -1.55
HERC4-209ENST00000473533 BOD1Q96IK1 185 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 BTF3L4Q96K17 158 aa5.35□□□□□ -1.55
HERC4-209ENST00000473533 PUS1Q9Y606 427 aaKnown RBP eCLIP5.35□□□□□ -1.55
HERC4-209ENST00000473533 hCG_1809904A0A1W2PP81 198 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 A0A1W2PR64 198 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 A0A1W2PRV1 198 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TRDCB7Z8K6 153 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 C9JQL5 133 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 F5H5K5 113 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 MSTNO14793 375 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 PDCD6O75340 191 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 SLC34A2O95436 690 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 GLB1P16278 677 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 ZNF17P17021 662 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TCN2P20062 427 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 RPL23AP62750 156 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 MRPS34P82930 218 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 SPEM2Q0P670 501 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TAF9Q16594 264 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 RBMS3Q6XE24 437 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 C6orf201Q7Z4U5 140 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 HSD17B11Q8NBQ5 300 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 BHLHE23Q8NDY6 225 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 OR4D5Q8NGN0 318 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 ERGIC1Q969X5 290 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms