RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 FXYD4P59646 89 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 LSM6P62312 80 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 SUPT4H1P63272 117 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 RIPPLY1Q0D2K3 151 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 AADACL3Q5VUY0 350 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 JMJD6Q6NYC1 403 aaPredicted RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 SLC16A14Q7RTX9 510 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 GPR137CQ8N3F9 429 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 CPEB3Q8NE35 698 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 FNDC9Q8TBE3 224 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 MITD1Q8WV92 249 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 URM1Q9BTM9 101 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 PECRQ9BY49 303 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 TTTY12Q9BZ98 90 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 DEFB127Q9H1M4 99 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 CRIM1Q9NZV1 1036 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 A0A0A6YYH2 397 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 A6NJ64 397 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 MFNGO00587 321 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 CSTBP04080 98 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 FGF2P09038 288 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 CNR1P21554 472 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 RPS27AP62979 156 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 SSBP1Q04837 148 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 CHRFAM7AQ494W8 412 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 FAM27BQ5VT28 67 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 HOGA1Q86XE5 327 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 OR56B1Q8NGI3 324 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 SCARB1Q8WTV0 552 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 DCUN1D4Q92564 292 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 LRRC46Q96FV0 321 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 HS3ST6Q96QI5 342 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 PARP12Q9H0J9 701 aaKnown RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 ZNF703Q9H7S9 590 aaPredicted RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 OR5AC2Q9NZP5 309 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 MLXQ9UH92 298 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 GPR132Q9UNW8 380 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 KLF2Q9Y5W3 355 aaPredicted RBP8.22□□□□□ -1.09
CUX1-206ENST00000437600 LIPGQ9Y5X9 500 aa8.22□□□□□ -1.09
CUX1-206ENST00000437600 ZNF716A6NP11 495 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 NPBWR2P48146 333 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 RSU1Q15404 277 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 TUSC5Q8IXB3 177 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 TMEM251Q8N6I4 163 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 ADPRHL1Q8NDY3 354 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 SEMA6DQ8NFY4 1073 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 OR2V1Q8NHB1 315 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 THAP6Q8TBB0 222 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 TMEM68Q96MH6 324 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 FOXB1Q99853 325 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 RNF126Q9BV68 326 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 CHMP1AQ9HD42 196 aaPredicted RBP8.21□□□□□ -1.09
CUX1-206ENST00000437600 BOKQ9UMX3 212 aaPredicted RBP8.21□□□□□ -1.09
CUX1-206ENST00000437600 PCNX1Q96RV3 2341 aa8.21□□□□□ -1.09
CUX1-206ENST00000437600 IGKV1-12A0A0C4DH73 117 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 KLK10O43240 276 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 IGKV1D-12P01611 117 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 S100A10P60903 97 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 AIMP2Q13155 320 aaKnown RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 KCNMB1Q16558 191 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 PDZD9Q8IXQ8 264 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 OR5M9Q8NGP3 310 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 HAS2Q92819 552 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 ZNF2Q9BSG1 426 aaPredicted RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 TNFSF18Q9UNG2 199 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 CADP27708 2225 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 KIAA1549Q9HCM3 1950 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 LOC102725191A0A1B0GVB3 256 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 KANTRA0A1W2PQU2 76 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 A0A1W2PR80 420 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 ZNF503-AS2A6NEH8 195 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 F8W036 122 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 H7C2Y5 167 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 SLC33A1O00400 549 aaPredicted RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 SYNGR3O43761 229 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 VAMP5O95183 116 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 RPA2P15927 270 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 HOXA1P49639 335 aaPredicted RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 GFRA1P56159 465 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 ARG2P78540 354 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 CLN3Q13286 438 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 TMEM128Q5BJH2 165 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 C10orf128Q5T292 105 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 MOB3CQ70IA8 216 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 CALHM1Q8IU99 346 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 FBXL14Q8N1E6 418 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 ZSCAN4Q8NAM6 433 aaPredicted RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 INO80EQ8NBZ0 244 aaPredicted RBP8.21□□□□□ -1.1
CUX1-206ENST00000437600 OR6K3Q8NGY3 331 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 OR1F12Q8NHA8 337 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 SSC4DQ8WTU2 575 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 SPTSSAQ969W0 71 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 NTNG2Q96CW9 530 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 FAM173AQ9BQD7 235 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 PRRG4Q9BZD6 226 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 CHST5Q9GZS9 411 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 MOB1AQ9H8S9 216 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 SLC7A10Q9NS82 523 aa8.21□□□□□ -1.1
CUX1-206ENST00000437600 ZFYVE26Q68DK2 2539 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms