RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 RNASEK-C17orf49H0YIS7 233 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 HOXA3O43365 443 aaPredicted RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 SPRY1O43609 319 aaPredicted RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 CCDC159P0C7I6 412 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 OCM2P0CE71 109 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 OCMP0CE72 109 aaPredicted RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 BCL3P20749 454 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 NPBWR2P48146 333 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 COL10A1Q03692 680 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 GABPB1Q06547 395 aaPredicted RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 KLRD1Q13241 179 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 TMPRSS11AQ6ZMR5 421 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 LHFPL2Q6ZUX7 228 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 MKXQ8IYA7 352 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 OR4M1Q8NGD0 313 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 TSEN15Q8WW01 171 aaKnown RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 ZCCHC4Q9H5U6 513 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 ZMAT3Q9HA38 289 aaKnown RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 TNFRSF19Q9NS68 423 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 CLEC2DQ9UHP7 191 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 DIMT1Q9UNQ2 313 aaKnown RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 CAB39Q9Y376 341 aaPredicted RBP12.16□□□□□ -0.46
LIMS4-201ENST00000413601 HSPE1-MOB4S4R3N1 261 aa12.16□□□□□ -0.46
LIMS4-201ENST00000413601 A0A0U1RQK1 487 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 A0A1W2PRD5 423 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 A0A1W2PRF3 423 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 A0A1W2PRM7 423 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 H0YAE9 185 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 CLDN34H7C241 214 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 M0R1W7 72 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 CYB5AP00167 134 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 TK1P04183 234 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RNASE1P07998 156 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RPSAP08865 295 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 CALCBP10092 127 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 MYL12AP19105 171 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RPL31P62899 125 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 PDZK1IP1Q13113 114 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 LAIR2Q6ISS4 152 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RPL22L1Q6P5R6 122 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 METAP1DQ6UB28 335 aaPredicted RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 Q6YL49 198 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 C1orf122Q6ZSJ8 110 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 SERPINA12Q8IW75 414 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 C8orf59Q8N0T1 100 aaPredicted RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 ASCC1Q8N9N2 400 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 HAVCR2Q8TDQ0 301 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RGP1Q92546 391 aaPredicted RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 GGHQ92820 318 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 TNFRSF14Q92956 283 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 EMG1Q92979 244 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 SPSB1Q96BD6 273 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 TMEM80Q96HE8 168 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 METTL8Q9H825 291 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 NOX4Q9NPH5 578 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 RBFOX1Q9NWB1 397 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 IL36RNQ9UBH0 155 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 DHDHQ9UQ10 334 aa12.15□□□□□ -0.46
LIMS4-201ENST00000413601 EXOSC1Q9Y3B2 195 aaKnown RBP12.15□□□□□ -0.46
LIMS4-201ENST00000413601 K7N7A8 449 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 ANGPTL7O43827 346 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 MT-ND2P03891 347 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 CHRM2P08172 466 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 MELTFP08582 738 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 COMPP49747 757 aaPredicted RBP12.14□□□□□ -0.47
LIMS4-201ENST00000413601 ST3GAL4Q11206 333 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 BLMHQ13867 455 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 CDK5R1Q15078 307 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 CCDC58Q4VC31 144 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 TMEM200BQ69YZ2 307 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 CRIP3Q6Q6R5 217 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 Q8IYB0 196 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 FAM58AQ8N1B3 248 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 PNKDQ8N490 385 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 PARP16Q8N5Y8 322 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 OR5D18Q8NGL1 313 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 OR5D14Q8NGL3 314 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 FAM234AQ9H0X4 552 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 VCXQ9H320 206 aa12.14□□□□□ -0.47
LIMS4-201ENST00000413601 SIRT4Q9Y6E7 314 aaPredicted RBP12.14□□□□□ -0.47
LIMS4-201ENST00000413601 IGKV1-12A0A0C4DH73 117 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 ERICH4A6NGS2 130 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 SULT1B1O43704 296 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 XPNPEP2O43895 674 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 ZNF737O75373 536 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 LALBAP00709 142 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 IGKV1D-12P01611 117 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 HCKP08631 526 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 HKR1P10072 659 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 PIPP12273 146 aaPredicted RBP12.13□□□□□ -0.47
LIMS4-201ENST00000413601 PRKACAP17612 351 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 EEF1B2P24534 225 aaKnown RBP12.13□□□□□ -0.47
LIMS4-201ENST00000413601 DUSP1P28562 367 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 SOX2P48431 317 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 SNU13P55769 128 aaKnown RBP12.13□□□□□ -0.47
LIMS4-201ENST00000413601 GUCA2AQ02747 115 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 SLC34A1Q06495 639 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 FIP1L1Q6UN15 594 aaKnown RBP12.13□□□□□ -0.47
LIMS4-201ENST00000413601 RPS4Y2Q8TD47 263 aa12.13□□□□□ -0.47
LIMS4-201ENST00000413601 FBLIM1Q8WUP2 373 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms