RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 ACKR3P25106 362 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ID4P47928 161 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 DSCR4P56555 118 aaPredicted RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 CLINT1Q14677 625 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SMAD2Q15796 467 aaKnown RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SRSF7Q16629 238 aaKnown RBP eCLIP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 KRTAP27-1Q3LI81 207 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 PHYHD1Q5SRE7 291 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 LCN10Q6JVE6 187 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 Q6ZS49 121 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 GPR137CQ8N3F9 429 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 TMEM156Q8N614 296 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 OR4D5Q8NGN0 318 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 BORCS8Q96FH0 119 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 OR6C1Q96RD1 312 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SPIN2AQ99865 258 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SPIN2BQ9BPZ2 258 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 HDHD3Q9BSH5 251 aaPredicted RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ULBP2Q9BZM5 246 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 HIPK2Q9H2X6 1198 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 LIME1Q9H400 295 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 WDR54Q9H977 334 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SLC2A9Q9NRM0 540 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 GPR173Q9NS66 373 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 NXT1Q9UKK6 140 aaKnown RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 TCFL5Q9UL49 500 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 LHX6Q9UPM6 363 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 MRPS17Q9Y2R5 130 aaKnown RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ARID1BQ8NFD5 2236 aaPredicted RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 LOC102723996A0A087X1L8 192 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 PIGBOS1A0A0B4J2F0 54 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A10PA6NDY2 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A18PA6NE21 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A16PA6NEW6 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A20PA6NIJ5 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A8PA6NJQ4 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A7PA6NKC0 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A22PA8MWA6 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A12PA8MX19 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A5PA8MXJ8 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A23PA8MXZ1 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 K7N7A8 449 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 MSTNO14793 375 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 BCAT2O15382 392 aaPredicted RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SGCEO43556 437 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SYNGR3O43761 229 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 IFNA17P01571 189 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 PRH1P02810 166 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A15PP0C7V4 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A13PP0C7W8 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A14PP0C7W9 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FAM90A24PP0C7X0 464 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ZNF806P0C7X5 589 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 S100PP25815 95 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SULT1A1P50225 295 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 FOXL2P58012 376 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 RND3P61587 244 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 TAF9Q16594 264 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ZNF574Q6ZN55 896 aaPredicted RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 LYZL2Q7Z4W2 148 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 OSR2Q8N2R0 312 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 TOMM40LQ969M1 308 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 REEP6Q96HR9 211 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 CYYR1Q96J86 154 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 GNRHR2Q96P88 292 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 MESP1Q9BRJ9 268 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 RBM24Q9BX46 236 aaKnown RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 SLC25A31Q9H0C2 315 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 OR51M1Q9H341 326 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 C11orf1Q9H5F2 150 aa8.69□□□□□ -1.02
COL17A1-203ENST00000393211 ZMAT5Q9UDW3 170 aaKnown RBP8.69□□□□□ -1.02
COL17A1-203ENST00000393211 KNL1Q8NG31 2342 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 A0A087WWC5 75 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 AP4M1O00189 453 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 HSPA12AO43301 675 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 PDCD6O75340 191 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 PITX3O75364 302 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 FABP1P07148 127 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 LIFP15018 202 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 EIF2S3P41091 472 aaKnown RBP8.68□□□□□ -1.02
COL17A1-203ENST00000393211 FUT6P51993 359 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 HERV-K104P61576 105 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 RAC1P63000 192 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 MALLQ13021 153 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 EXT1Q16394 746 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 SNAI3Q3KNW1 292 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 MRPL14Q6P1L8 145 aaKnown RBP8.68□□□□□ -1.02
COL17A1-203ENST00000393211 OR1F12Q8NHA8 337 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 NANPQ8TBE9 248 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 FBXO17Q96EF6 278 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 BOD1Q96IK1 185 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 TMEM56Q96MV1 263 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 ZNF385AQ96PM9 386 aaKnown RBP8.68□□□□□ -1.02
COL17A1-203ENST00000393211 DUSP23Q9BVJ7 150 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 FAM86C1Q9NVL1 165 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 SLC7A11Q9UPY5 501 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 RCL1Q9Y2P8 373 aaKnown RBP8.68□□□□□ -1.02
COL17A1-203ENST00000393211 TMEM56-RWDD3S4R434 201 aa8.68□□□□□ -1.02
COL17A1-203ENST00000393211 CEP192Q8TEP8 1941 aa8.67□□□□□ -1.02
COL17A1-203ENST00000393211 A0A1W2PPH5 198 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms