RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 C22orf46C9J442 243 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 GPR25O00155 361 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 NAPSAO96009 420 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 B3GALT4O96024 378 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ERGP11308 486 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 OTX1P32242 354 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TMPRSS3P57727 454 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PMS2P11Q13670 270 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 HIST3H3Q16695 136 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 FCRLAQ7L513 359 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PDZD3Q86UT5 571 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 HAPLN4Q86UW8 402 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 IRF2BP1Q8IU81 584 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 OR2V1Q8NHB1 315 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 IRGQQ8WZA9 623 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ASB9Q96DX5 294 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PIPOXQ9P0Z9 390 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 FLVCR1Q9Y5Y0 555 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TCRBV3S1A0A5B6 114 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 DLL1O00548 723 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 P01737 135 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SBK3P0C264 359 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 GPX2P18283 190 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 GALR1P47211 349 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TMEM78Q5T7P6 136 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 MOGAT3Q86VF5 341 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF784Q8NCA9 323 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 KAZALD1Q96I82 304 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF665Q9H7R5 613 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 POPDC3Q9HBV1 291 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TAAR2Q9P1P5 351 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PGAP2Q9UHJ9 254 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 HEATR5AQ86XA9 2040 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CNTNAP4Q9C0A0 1308 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 FFAR1O14842 300 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PAGE4O60829 102 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CD33P20138 364 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CCR6P51684 374 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SNRPD3P62318 126 aaKnown RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SRSF7Q16629 238 aaKnown RBP eCLIP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CNIH2Q6PI25 160 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CPOQ8IVL8 374 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 OR4D11Q8NGI4 311 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 VSTM2AQ8TAG5 236 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SLC7A13Q8TCU3 470 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 DTD2Q96FN9 168 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 DPH2Q9BQC3 489 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PLAC1Q9HBJ0 212 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TNFRSF18Q9Y5U5 241 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 AGLP35573 1532 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ROBO3Q96MS0 1386 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TRAV36DV7A0A075B6V5 113 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 IGHV3-20A0A0C4DH32 117 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 M0R143 59 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TGFB1I1O43294 461 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SIX6O95475 246 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 C4BPAP04003 597 aaKnown RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 EBLN1P0CF75 366 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 NAT1P18440 290 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CLDN12P56749 244 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 JAM2P57087 298 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 LCN8Q6JVE9 175 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SLCO4C1Q6ZQN7 724 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 DPPA4Q7L190 304 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 C16orf82Q7Z2V1 217 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 LILRA2Q8N149 483 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 GNRHR2Q96P88 292 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TXLNGYQ9BZA5 131 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PIKFYVEQ9Y2I7 2098 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PEX7O00628 323 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SOCS7O14512 581 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 AKR7A3O95154 331 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 IGHV4-39P01824 125 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 CD74P04233 296 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TMIGD3P0DMS9 266 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SFTPCP11686 197 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PTBP1P26599 531 aaKnown RBP eCLIP4.17□□□□□ -1.743e-7■■■■□ 20.5
SCN1A-202ENST00000375405 DLX5P56178 289 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 NKAIN1Q4KMZ8 207 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZDHHC23Q8IYP9 409 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TCTEX1D1Q8N7M0 179 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 GATD1Q8NB37 220 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TP53I13Q8NBR0 393 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF480Q8WV37 535 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 NEIL1Q96FI4 390 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 THAP7Q9BT49 309 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 EMC6Q9BV81 110 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SEC11CQ9BY50 192 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 MS4A5Q9H3V2 200 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 MT-ATP6P00846 226 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 OPRM1P35372 400 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 MRPL58Q14197 206 aaKnown RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TMEM170BQ5T4T1 132 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 NSUN5P2Q63ZY6 315 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF774Q6NX45 483 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 TEPPQ6URK8 271 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PLD6Q8N2A8 252 aaKnown RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 ZNF689Q96CS4 500 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-202ENST00000375405 PKMYT1Q99640 499 aa4.17□□□□□ -1.74
SCN1A-202ENST00000375405 SSU72Q9NP77 194 aaKnown RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms