RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 FOXN4Q96NZ1 517 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 SCGB3A2Q96PL1 93 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 CTDSP1Q9GZU7 261 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 ZNF700Q9H0M5 742 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 HIPK2Q9H2X6 1198 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 GPR84Q9NQS5 396 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 APOBEC3BQ9UH17 382 aaKnown RBP8.38□□□□□ -1.07
SF3A3-201ENST00000373019 RPH3ALQ9UNE2 315 aa8.38□□□□□ -1.07
SF3A3-201ENST00000373019 SOCS1O15524 211 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 OR2J2O76002 312 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 HOXC12P31275 282 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 RBMXP38159 391 aaKnown RBP8.37□□□□□ -1.07
SF3A3-201ENST00000373019 ARHGAP19Q14CB8 494 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 MPV17LQ2QL34 196 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 FBXL14Q8N1E6 418 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 NECAP1Q8NC96 275 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 LINC00615Q96LM1 132 aaPredicted RBP8.37□□□□□ -1.07
SF3A3-201ENST00000373019 MS4A10Q96PG2 267 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 PCGF1Q9BSM1 259 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 LRIT1Q9P2V4 623 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 B3GALT5Q9Y2C3 310 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 PAM16Q9Y3D7 125 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 HCFC2Q9Y5Z7 792 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM14AQ9Y6G1 99 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 IGKV1D-42A0A075B6H8 117 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 SMPD2O60906 423 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 HIST1H3AP68431 136 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 IL24Q13007 206 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 PRDX4Q13162 271 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 ENDOGQ14249 297 aaKnown RBP8.37□□□□□ -1.07
SF3A3-201ENST00000373019 POM121L1PQ3SYA9 428 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 KIAA2026Q5HYC2 2103 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 CDCP2Q5VXM1 449 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 MARCH3Q86UD3 253 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 OR2A1Q8NGT9 310 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM171Q8WVE6 324 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 EMG1Q92979 244 aaKnown RBP8.37□□□□□ -1.07
SF3A3-201ENST00000373019 LPAR5Q9H1C0 372 aa8.37□□□□□ -1.07
SF3A3-201ENST00000373019 ZFHX2Q9C0A1 2572 aaPredicted RBP8.37□□□□□ -1.07
SF3A3-201ENST00000373019 SRSF10O75494 262 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CTXN1P60606 82 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 FOXK1P85037 733 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 COX15Q7KZN9 410 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CENPVQ7Z7K6 275 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 LINC01551Q86U37 167 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 OR52M1Q8NGK5 317 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 OR5H2Q8NGV7 314 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 PTPMT1Q8WUK0 201 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 REEP6Q96HR9 211 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 NUDT16L1Q9BRJ7 211 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 C19orf53Q9UNZ5 99 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 MRPS28Q9Y2Q9 187 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CHD9Q3L8U1 2897 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TRIOO75962 3097 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 LOC101059948A0A1B0GTJ6 334 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM14DPA8MWL7 114 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 LILRA1O75019 489 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 DNASE1L1P49184 302 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 RAB38P57729 211 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 FAM3BP58499 235 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 PRDX1Q06830 199 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TOMM20LQ6UXN7 152 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CACUL1Q86Y37 369 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM123Q8N131 208 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CIB3Q96Q77 187 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TSPAN32Q96QS1 320 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 UBE2ZQ9H832 354 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM74BQ9NUR3 256 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CD207Q9UJ71 328 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 HIF3AQ9Y2N7 669 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 OR5G3P0C626 314 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 ZNF92Q03936 586 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 DLX2Q07687 328 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CLEC12BQ2HXU8 276 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 ASTLQ6HA08 431 aaPredicted RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 Q6ZWC4 215 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 C16orf82Q7Z2V1 217 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 ZNF321PQ8N8H1 164 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 MFSD9Q8NBP5 474 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 C8orf44Q96CB5 159 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 RBMXL1Q96E39 390 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 VN1R1Q9GZP7 353 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 TMEM106BQ9NUM4 274 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CLDN16Q9Y5I7 305 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 ATG2AQ2TAZ0 1938 aa8.36□□□□□ -1.07
SF3A3-201ENST00000373019 CNOT1A5YKK6 2376 aaKnown RBP8.36□□□□□ -1.07
SF3A3-201ENST00000373019 BPNT1O95861 308 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 TUBG1P23258 451 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 CNN1P51911 297 aaKnown RBP8.35□□□□□ -1.07
SF3A3-201ENST00000373019 CDK3Q00526 305 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 EWSR1Q01844 656 aaKnown RBP eCLIP8.35□□□□□ -1.07
SF3A3-201ENST00000373019 ROM1Q03395 351 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 ITPRIPL2Q3MIP1 535 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 C1orf185Q5T7R7 199 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 C1orf140Q5VVS0 124 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 RNF44Q7L0R7 432 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 LHFPL4Q7Z7J7 247 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 KCNE4Q8WWG9 221 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 IL22RA2Q969J5 263 aa8.35□□□□□ -1.07
SF3A3-201ENST00000373019 BOD1Q96IK1 185 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms