RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ZNF816-ZNF321PA0A0X1KG74 233 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 GPR137BO60478 399 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 CFIP05156 583 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 RCC1P18754 421 aaPredicted RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 NME2P22392 152 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 GLP1RP43220 463 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 DVL1P1P54792 670 aaPredicted RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 PSG4Q00888 419 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 MALLQ13021 153 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 HMGN3Q15651 99 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 TMEM211Q6ICI0 200 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 YRDCQ86U90 279 aaKnown RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 LGI3Q8N145 548 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 CCDC71LQ8N9Z2 235 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 OR10AD1Q8NGE0 317 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 TOMM40LQ969M1 308 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 MOB3AQ96BX8 217 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 C18orf12Q96KH6 178 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 LIME1Q9H400 295 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 FAM212BQ9NTI7 297 aaPredicted RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 MLXQ9UH92 298 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 FBXO9Q9UK97 447 aaPredicted RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 ZNF175Q9Y473 711 aa12.4□□□□□ -0.42
CD48-201ENST00000368045 LSM5Q9Y4Y9 91 aaKnown RBP12.4□□□□□ -0.42
CD48-201ENST00000368045 NCOA6Q14686 2063 aaPredicted RBP12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A10PA6NDY2 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A18PA6NE21 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A16PA6NEW6 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A20PA6NIJ5 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A8PA6NJQ4 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A7PA6NKC0 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A22PA8MWA6 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A12PA8MX19 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A5PA8MXJ8 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A23PA8MXZ1 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 B4E171 279 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 CXCL13O43927 109 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 MBPP02686 304 aaPredicted RBP12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A15PP0C7V4 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 SEC11BP0C7V7 166 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A13PP0C7W8 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A14PP0C7W9 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FAM90A24PP0C7X0 464 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 B4GALT1P15291 398 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 TCN2P20062 427 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 DUSP1P28562 367 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 OPRM1P35372 400 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 TSPAN7P41732 249 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 IL13RA2Q14627 380 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 SWI5Q1ZZU3 235 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 ZNF468Q5VIY5 522 aaPredicted RBP12.39□□□□□ -0.43
CD48-201ENST00000368045 TMEM88Q6PEY1 159 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 CBLN2Q8IUK8 224 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 SKA3Q8IX90 412 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 FBXL14Q8N1E6 418 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 AKR7LQ8NHP1 331 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 SPSB4Q96A44 273 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 TMEM231Q9H6L2 316 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 GPR35Q9HC97 309 aa12.39□□□□□ -0.43
CD48-201ENST00000368045 IGKV1-12A0A0C4DH73 117 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 GEMIN2O14893 280 aaKnown RBP12.38□□□□□ -0.43
CD48-201ENST00000368045 CER1O95813 267 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 IGKV1D-12P01611 117 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 OR5AC1P0C628 307 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 SFTA3P0C7M3 94 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 NTF4P34130 210 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 RFC3P40938 356 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 P2RY1P47900 373 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 NPBWR1P48145 328 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 RRADP55042 308 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 RBM11P57052 281 aaKnown RBP12.38□□□□□ -0.43
CD48-201ENST00000368045 SRPXP78539 464 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 FAM76BQ5HYJ3 339 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 SLC22A25Q6T423 547 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 FAM185AQ8N0U4 392 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 KDF1Q8NAX2 398 aaPredicted RBP12.38□□□□□ -0.43
CD48-201ENST00000368045 TMEM45BQ96B21 275 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 RSRP1Q9BUV0 290 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PRDM14Q9GZV8 571 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PLSCR2Q9NRY7 297 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 ST3GAL6Q9Y274 331 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 STARD10Q9Y365 291 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 FAM96BQ9Y3D0 163 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 LRRC3CA6NJW4 275 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PRSS44E7EML9 344 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 LINC01387J3KSC0 135 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 CYTIPO60759 359 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 FARS2O95363 451 aaKnown RBP12.38□□□□□ -0.43
CD48-201ENST00000368045 FUT3P21217 361 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PAX6P26367 422 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 RAB5CP51148 216 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 HERV-K104P61576 105 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 SRSF7Q16629 238 aaKnown RBP eCLIP12.38□□□□□ -0.43
CD48-201ENST00000368045 RSPO4Q2I0M5 234 aaPredicted RBP12.38□□□□□ -0.43
CD48-201ENST00000368045 CEACAM16Q2WEN9 425 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PIGYQ3MUY2 71 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PLCXD3Q63HM9 321 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 Q6ZRG5 221 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 Q6ZS49 121 aa12.38□□□□□ -0.43
CD48-201ENST00000368045 PPP1R32Q7Z5V6 425 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms