RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SUMF2Q8NBJ7 301 aa19.52■□□□□ 0.72
TRIM28-202ENST00000341753 POC1BQ8TC44 478 aa19.52■□□□□ 0.72
TRIM28-202ENST00000341753 MARS2Q96GW9 593 aaKnown RBP19.52■□□□□ 0.72
TRIM28-202ENST00000341753 PFDN5Q99471 154 aa19.52■□□□□ 0.72
TRIM28-202ENST00000341753 A0A1W2PNV4 684 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 SPRY1O43609 319 aaPredicted RBP19.52■□□□□ 0.71
TRIM28-202ENST00000341753 DUX1O43812 170 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 DBHP09172 617 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 TMEM187Q14656 261 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 PYY3Q5JQD4 70 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 NSUN5P2Q63ZY6 315 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 STT3BQ8TCJ2 826 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 PPP4R1LQ9P1A2 415 aa19.52■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF728P0DKX0 622 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 CHATP28329 748 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 FAM69BQ5VUD6 431 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 HEPN1Q6WQI6 88 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 FBXW12Q6X9E4 464 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 PLXDC1Q8IUK5 500 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 D2HGDHQ8N465 521 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 CADM4Q8NFZ8 388 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 PBDC1Q9BVG4 233 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 AK3Q9UIJ7 227 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 KCNIP3Q9Y2W7 256 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 OMGP23515 440 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 CPEB2Q7Z5Q1 589 aaKnown RBP19.51■□□□□ 0.71
TRIM28-202ENST00000341753 NAA60Q9H7X0 242 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 GPR173Q9NS66 373 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 RALGAPA1Q6GYQ0 2036 aa19.51■□□□□ 0.71
TRIM28-202ENST00000341753 TIAF1O95411 115 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 RAB5CP51148 216 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 PDZD11Q5EBL8 140 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 ZFP62Q8NB50 900 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-202ENST00000341753 MALSU1Q96EH3 234 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 CEP192Q8TEP8 1941 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 NSG1A0A0A6YYJ2 146 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 SLC33A1O00400 549 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-202ENST00000341753 MEX3BQ6ZN04 569 aaKnown RBP19.5■□□□□ 0.71
TRIM28-202ENST00000341753 SUMF1Q8NBK3 374 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 PIGQQ9BRB3 760 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 SDHAF3Q9NRP4 125 aa19.5■□□□□ 0.71
TRIM28-202ENST00000341753 A0A1B0GX78 115 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 H7C1Q1 480 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 CSNK1A1P48729 337 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 PDCD1Q15116 288 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 HAGHQ16775 308 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 KDF1Q8NAX2 398 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF501Q96CX3 271 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-202ENST00000341753 MVB12AQ96EY5 273 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 TM2D1Q9BX74 207 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF726A6NNF4 738 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 BCAT2O15382 392 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-202ENST00000341753 PLPPR5Q32ZL2 321 aa19.49■□□□□ 0.71
TRIM28-202ENST00000341753 CCDC187A0A096LP49 1063 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF674Q2M3X9 581 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 YPEL4Q96NS1 127 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 FAM230AA0A1W2PPH8 454 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 FAM24AA6NFZ4 105 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 H0YL77 283 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 KLK3P07288 261 aaPredicted RBP19.48■□□□□ 0.71
TRIM28-202ENST00000341753 CLDN17P56750 224 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF383Q8NA42 475 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 HAS2Q92819 552 aa19.48■□□□□ 0.71
TRIM28-202ENST00000341753 SHANK1Q9Y566 2161 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 CCDC163A0A0D9SF12 145 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 TRBV11-1A0A0K0K1C0 115 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 RRP8O43159 456 aaKnown RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 DHRS3O75911 302 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 CXCL1P09341 107 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 GLB1P16278 677 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 GRB2P62993 217 aaKnown RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 TMEM176BQ3YBM2 270 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF574Q6ZN55 896 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 OR10G3Q8NGC4 313 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 MUCL1Q96DR8 90 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 CHRNA10Q9GZZ6 450 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 SLC2A9Q9NRM0 540 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 DOK5Q9P104 306 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 K7N7A8 449 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 PHF1O43189 567 aaPredicted RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 ONECUT2O95948 504 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 HOXA5P20719 270 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 MTCP1P56278 107 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 OR2AE1Q8NHA4 323 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 RAB39BQ96DA2 213 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 RHOVQ96L33 236 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 Q96M66 194 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 STRAPQ9Y3F4 350 aaKnown RBP19.47■□□□□ 0.71
TRIM28-202ENST00000341753 DMRT1Q9Y5R6 373 aa19.47■□□□□ 0.71
TRIM28-202ENST00000341753 H3BQ15 152 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 LMO1P25800 156 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 PHYHD1Q5SRE7 291 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 SLC16A14Q7RTX9 510 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 BATF2Q8N1L9 274 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 OR2G3Q8NGZ4 309 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 ZNF700Q9H0M5 742 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 ST8SIA3O43173 380 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 TAGLN2P37802 199 aaKnown RBP19.46■□□□□ 0.71
TRIM28-202ENST00000341753 ECI1P42126 302 aa19.46■□□□□ 0.71
TRIM28-202ENST00000341753 ALDH3B1P43353 468 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms