RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 LAMTOR1Q6IAA8 161 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ADAD2Q8NCV1 583 aaKnown RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR14C36Q8NHC7 312 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PLD4Q96BZ4 506 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SMOQ99835 787 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 IGHV3-15A0A0B4J1V0 119 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CD5P06127 495 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PPOXP50336 477 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SMIM19Q96E16 107 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TGM7Q96PF1 710 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TEAD3Q99594 435 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 PDCD2LQ9BRP1 358 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TRBV5-4A0A0C4DH59 114 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CTNSO60931 367 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SP7Q8TDD2 431 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ADOQ96SZ5 270 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MKKSQ9NPJ1 570 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC7A7Q9UM01 511 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 GPR55Q9Y2T6 319 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF736B4DX44 427 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 RNASEK-C17orf49H0YIS7 233 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 CMTM8Q8IZV2 173 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR52N4Q8NGI2 321 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR51A4Q8NGJ6 313 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF563Q8TA94 476 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SIRT4Q9Y6E7 314 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ALOX12BO75342 701 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SSX8Q7RTT4 187 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ACOT4Q8N9L9 421 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 OR52P1PQ8NH57 321 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 IP6K3Q96PC2 410 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 DLL4Q9NR61 685 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 COA4Q9NYJ1 87 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MTCH1Q9NZJ7 389 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 KLK11Q9UBX7 282 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 FGF16O43320 207 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SOD1P00441 154 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 IMPA1P29218 277 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF626Q68DY1 528 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SLC27A1Q6PCB7 646 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 HAPLN4Q86UW8 402 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SECTM1Q8WVN6 248 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 ALKBH7Q9BT30 221 aaPredicted RBP3.17□□□□□ -1.9
SYNE1-201ENST00000341594 SRMSQ9H3Y6 488 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 NRIP3Q9NQ35 241 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 MYOTQ9UBF9 498 aa3.17□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM250H0YL14 139 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CRYBB1P53674 252 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 AESQ08117 197 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 KIAA0895LQ68EN5 471 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM229BQ8NBD8 167 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FUBP1Q96AE4 644 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 NMNAT3Q96T66 252 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GPR160Q9UJ42 338 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FOXD3Q9UJU5 478 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PIRO00625 290 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GPR137BO60478 399 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 WNT5AP41221 380 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FLT3LGP49771 235 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 MRGPRDQ8TDS7 321 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 LMX1AQ8TE12 382 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SELENOIQ9C0D9 397 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RAB33BQ9H082 229 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SEBOXQ9HB31 216 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 P2RX2Q9UBL9 471 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RPIAP49247 311 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SLBPQ14493 270 aaKnown RBP eCLIP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RPE65Q16518 533 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PGAM5Q96HS1 289 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 NTNG2Q96CW9 530 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 V9GYH0 126 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HHLA1C9JL84 531 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR8G3PP0DMU2 310 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF620Q6ZNG0 422 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DDA1Q9BW61 102 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 LAMP3Q9UQV4 416 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 VSIG4Q9Y279 399 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 BCL2L11O43521 198 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 EPHA8P29322 1005 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HIST2H2BDQ6DRA6 164 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DPY19L2P2Q6ZN68 376 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 NHLRC2Q8NBF2 726 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR51Q1Q8NH59 317 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FAAP24Q9BTP7 215 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TAF9BQ9HBM6 251 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZFP64Q9NPA5 681 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SLC39A9Q9NUM3 307 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CHEK1O14757 476 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 LDB3O75112 727 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 KHKP50053 298 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PDX1P52945 283 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF679Q8IYX0 411 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 D2HGDHQ8N465 521 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SMIM8Q96KF7 97 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 F5H5K5 113 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FRKP42685 505 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DAP3P51398 398 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 EGR3Q06889 387 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR52L2PQ8NGH6 319 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SLC6A18Q96N87 628 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms