RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ING3Q9NXR8 418 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 SLC2A8Q9NY64 477 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 AK3Q9UIJ7 227 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 PURGQ9UJV8 347 aaKnown RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 NOP16Q9Y3C1 178 aaKnown RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 TIMM8AO60220 97 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 PDCD6O75340 191 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 TUBG1P23258 451 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 FABP6P51161 128 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 FGF12P61328 243 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 ZFP69Q49AA0 526 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 ACTBL2Q562R1 376 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 CD276Q5ZPR3 534 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 WDR86Q86TI4 376 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 LIX1LQ8IVB5 337 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 RELL2Q8NC24 303 aaPredicted RBP11.43□□□□□ -0.58
HMGB1-202ENST00000339872 DYRK2Q92630 601 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF488Q96MN9 340 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 HS3ST6Q96QI5 342 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 OR51I2Q9H344 312 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 TUBG2Q9NRH3 451 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 IL36RNQ9UBH0 155 aa11.43□□□□□ -0.58
HMGB1-202ENST00000339872 TMEM82A0PJX8 343 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 VSIG10L2P0DP72 767 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 GCH1P30793 250 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 CCKARP32238 428 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 IL24Q13007 206 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 ZMYND11Q15326 602 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR8G1Q15617 311 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF718Q3SXZ3 478 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR11H7Q8NGC8 314 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR13C8Q8NGS7 320 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR5H2Q8NGV7 314 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 CMSS1Q9BQ75 279 aaKnown RBP11.42□□□□□ -0.58
HMGB1-202ENST00000339872 PKIBQ9C010 78 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 GPN1Q9HCN4 374 aaPredicted RBP11.42□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF69Q9UC07 566 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 TLN1Q9Y490 2541 aaKnown RBP11.42□□□□□ -0.58
HMGB1-202ENST00000339872 UBE2QL1A1L167 161 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 LRP5LA4QPB2 252 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 H0YL77 283 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 J3QT63 122 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 RHBDL1O75783 438 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 CRYAAP02489 173 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 IL5P05113 134 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 PRKACAP17612 351 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 MPZP25189 248 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 DAZAP2Q15038 168 aaPredicted RBP11.42□□□□□ -0.58
HMGB1-202ENST00000339872 TMED4Q7Z7H5 227 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR8G5Q8NG78 346 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 OR52B4Q8NGK2 314 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 TMEM100Q9NV29 134 aa11.42□□□□□ -0.58
HMGB1-202ENST00000339872 TRGV8A0A0C4DH27 118 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 IGHV3-64DA0A0J9YX35 117 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 CREBL2O60519 120 aaPredicted RBP11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FUT3P21217 361 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 KITLGP21583 273 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 TAS2R46P59540 309 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 C3orf36Q3SXR2 165 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 VAX1Q5SQQ9 334 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 RGS7BPQ6MZT1 257 aaPredicted RBP11.41□□□□□ -0.58
HMGB1-202ENST00000339872 SLC36A1Q7Z2H8 476 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 C1orf174Q8IYL3 243 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 TCTE3Q8IZS6 198 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 CHST6Q9GZX3 395 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF442Q9H7R0 627 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF222Q9UK12 451 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 PIEZO1Q92508 2521 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A10PA6NDY2 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A18PA6NE21 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A16PA6NEW6 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A20PA6NIJ5 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A8PA6NJQ4 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A7PA6NKC0 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A22PA8MWA6 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A12PA8MX19 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A5PA8MXJ8 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A23PA8MXZ1 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 MLNRO43193 412 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A15PP0C7V4 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A13PP0C7W8 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A14PP0C7W9 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 FAM90A24PP0C7X0 464 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 CXCL3P19876 107 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 OR3A3P47888 321 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 MAB21L1Q13394 359 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 NHLRC3Q5JS37 347 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 ATPAF1Q5TC12 328 aaPredicted RBP11.41□□□□□ -0.58
HMGB1-202ENST00000339872 MBNL2Q5VZF2 373 aaKnown RBP11.41□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF626Q68DY1 528 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 C22orf34Q6ZV56 151 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 PIAS4Q8N2W9 510 aaPredicted RBP11.41□□□□□ -0.58
HMGB1-202ENST00000339872 SCCPDHQ8NBX0 429 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 CAPSLQ8WWF8 208 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 RND1Q92730 232 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 MRGPRFQ96AM1 343 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 MED30Q96HR3 178 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 ELOVL5Q9NYP7 299 aa11.41□□□□□ -0.58
HMGB1-202ENST00000339872 NCOR2Q9Y618 2525 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms