RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 MRGPRDQ8TDS7 321 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 ASB5Q8WWX0 329 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 HIST1H2AAQ96QV6 131 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 SEPSECSQ9HD40 501 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 FSCN3Q9NQT6 498 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 MRPS2Q9Y399 296 aaKnown RBP4.89□□□□□ -1.63
CSDE1-202ENST00000339438 V9GYS6 101 aa4.89□□□□□ -1.63
CSDE1-202ENST00000339438 A0A0A6YYD4 124 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 A0A1B0GVT2 93 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM212A6NML5 194 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ARPC3O15145 178 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 NDUFS4O43181 175 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 FOXS1O43638 330 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 NUPR1O60356 82 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 IL33O95760 270 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CELA2BP08218 269 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 NID1P14543 1247 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SLC6A6P31641 620 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TNFSF10P50591 281 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 AFF3P51826 1226 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TLE4Q04727 773 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF616Q08AN1 781 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ZIC1Q15915 447 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TMEM241Q24JQ0 296 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF506Q5JVG8 444 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 GLYATL3Q5SZD4 288 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 FCRL6Q6DN72 434 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TEX43Q6ZNM6 134 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 LHFPL4Q7Z7J7 247 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TRAPPC6BQ86SZ2 158 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF584Q8IVC4 421 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ODF3L1Q8IXM7 274 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 KDM8Q8N371 416 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 OR13H1Q8NG92 308 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 OR10G4Q8NGN3 311 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 RASD2Q96D21 266 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 KTI12Q96EK9 354 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TVP23CQ96ET8 276 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TSSK2Q96PF2 358 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 GPX7Q96SL4 187 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 APOOQ9BUR5 198 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SRD5A3Q9H8P0 318 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 PLSCR2Q9NRY7 297 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TAC3Q9UHF0 121 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 PCNX3Q9H6A9 2034 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SCAF4O95104 1147 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 HSPB1P04792 205 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CST2P09228 141 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 C8orf89P0DMQ9 161 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CTSEP14091 401 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ALOX5APP20292 161 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SERPINA2P20848 420 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 RPL29P47914 159 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 UBE2KP61086 200 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 MFGE8Q08431 387 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SLC9A3R2Q15599 337 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 VAX1Q5SQQ9 334 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SLC25A24Q6NUK1 477 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SLC48A1Q6P1K1 146 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ADGRE4PQ86SQ3 457 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CLDND2Q8NHS1 167 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 OR1E3Q8WZA6 343 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 MIEN1Q9BRT3 115 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ALG12Q9BV10 488 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ANGPTL4Q9BY76 406 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SERINC1Q9NRX5 453 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 AHSPQ9NZD4 102 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 LUZP4Q9P127 313 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 MED31Q9Y3C7 131 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 STRAPQ9Y3F4 350 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 B4DGG1 531 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 HSPA12AO43301 675 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TGOLN2O43493 480 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 THEGLP0DJG4 465 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 HOXC12P31275 282 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 WNT5AP41221 380 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TAS2R31P59538 309 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 TPTE2P1Q5T6R2 138 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 FHL5Q5TD97 284 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ZNF679Q8IYX0 411 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SLC24A4Q8NFF2 622 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 RASL10BQ96S79 203 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SMIM3Q9BZL3 60 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 OR11A1Q9GZK7 315 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ADAP2Q9NPF8 381 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CGGBP1Q9UFW8 167 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 R4GN57 208 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 SHANK1Q9Y566 2161 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 PHF3Q92576 2039 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 B4DEV8 164 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 NUDT21O43809 227 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 ERAL1O75616 437 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 KNG1P01042 644 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CEACAM1P13688 526 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 EPHA8P29322 1005 aaPredicted RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 PEBP1P30086 187 aaKnown RBP4.88□□□□□ -1.63
CSDE1-202ENST00000339438 BCL6P41182 706 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 CXCL12P48061 93 aa4.88□□□□□ -1.63
CSDE1-202ENST00000339438 NOVA1P51513 510 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms