RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 FAM90A8PA6NJQ4 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A7PA6NKC0 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A22PA8MWA6 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A12PA8MX19 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A5PA8MXJ8 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A23PA8MXZ1 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF736B4DX44 427 aaPredicted RBP13.18□□□□□ -0.3
LIMS1-202ENST00000338045 PRSS44E7EML9 344 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FCER2P06734 321 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A15PP0C7V4 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A13PP0C7W8 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A14PP0C7W9 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A24PP0C7X0 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF250P15622 560 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 M6PRP20645 277 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 BCL3P20749 454 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 CD40P25942 277 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 CBX5P45973 191 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FABP6P51161 128 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 MSMPQ1L6U9 139 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 ALKBH2Q6NS38 261 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 C6orf201Q7Z4U5 140 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 OR56B4Q8NH76 319 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 HEATR1Q9H583 2144 aaKnown RBP13.18□□□□□ -0.3
LIMS1-202ENST00000338045 PLEKHJ1Q9NW61 149 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 TRAV6A0A075B6T7 132 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 TMEM210A6NLX4 147 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 F8VVB4 439 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 F8VWA3 439 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 TRAPPC2LH3BP13 241 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 MLNRO43193 412 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 TIMM8AO60220 97 aaPredicted RBP13.17□□□□□ -0.3
LIMS1-202ENST00000338045 TSPAN9O75954 239 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 NDUFB6O95139 128 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 RAB3DO95716 219 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 THBDP07204 575 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 TBPP20226 339 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 HLA-DMAP28067 261 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 OR8G1Q15617 311 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 CARTPTQ16568 116 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 FBXL19-AS1Q494R0 122 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 OR4S1Q8NGB4 309 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 OR10AD1Q8NGE0 317 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 FBXW5Q969U6 566 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 C20orf85Q9H1P6 137 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 RHOFQ9HBH0 211 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 IFT46Q9NQC8 304 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF581Q9P0T4 197 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 PCNX1Q96RV3 2341 aa13.17□□□□□ -0.3
LIMS1-202ENST00000338045 CCL21O00585 134 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 DHFRP00374 187 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 H2AFB2P0C5Z0 115 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF735P0CB33 412 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PPP3CBP16298 524 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ASCL1P50553 236 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF154Q13106 437 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ARFRP1Q13795 201 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TMEM108Q6UXF1 575 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ZNF782Q6ZMW2 699 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 Q6ZR03 302 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TMEM171Q8WVE6 324 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 SNAPC3Q92966 411 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 EMG1Q92979 244 aaKnown RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TINAGL1Q9GZM7 467 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 NPDC1Q9NQX5 325 aaPredicted RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 FZR1Q9UM11 496 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ALG5Q9Y673 324 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ITPR1Q14643 2758 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 C7orf66A4D0T2 115 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 ATP6V1G2-DDX39BF2Z307 99 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 H0YL77 283 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PDCD6O75340 191 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 IGHV3-13P01766 116 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TRAPPC2P0DI81 140 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TRAPPC2BP0DI82 140 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PTAFRP25105 342 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 CHRNB4P30926 498 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PMELP40967 661 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 MECP2P51608 486 aaKnown RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 RAB25P57735 213 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 MEF2DQ14814 521 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 RBMS2Q15434 407 aaKnown RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 IGFBP7Q16270 282 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 OR52W1Q6IF63 320 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 SCCPDHQ8NBX0 429 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 OR51S1Q8NGJ8 323 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 HS3ST6Q96QI5 342 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PLK3Q9H4B4 646 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 POU2F3Q9UKI9 436 aa13.16□□□□□ -0.3
LIMS1-202ENST00000338045 TMA7Q9Y2S6 64 aaKnown RBP13.16□□□□□ -0.3
LIMS1-202ENST00000338045 PKD1L2Q7Z442 2459 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 IGLV3-9A0A075B6K5 115 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-202ENST00000338045 M0QYG6 137 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 RHBDL1O75783 438 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 ACAA1P09110 424 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-202ENST00000338045 RPS23P62266 143 aaKnown RBP13.15□□□□□ -0.3
LIMS1-202ENST00000338045 MPV17LQ2QL34 196 aa13.15□□□□□ -0.3
LIMS1-202ENST00000338045 RNASE10Q5GAN6 216 aaKnown RBP13.15□□□□□ -0.3
LIMS1-202ENST00000338045 NKAPLQ5M9Q1 402 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms