RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 ZBTB8BQ8NAP8 495 aaPredicted RBP12□□□□□ -0.49
SS18-201ENST00000269137 SCCPDHQ8NBX0 429 aa12□□□□□ -0.49
SS18-201ENST00000269137 PECRQ9BY49 303 aa12□□□□□ -0.49
SS18-201ENST00000269137 ZNF442Q9H7R0 627 aa12□□□□□ -0.49
SS18-201ENST00000269137 DUSP13Q9UII6 198 aa12□□□□□ -0.49
SS18-201ENST00000269137 POLDIP2Q9Y2S7 368 aa12□□□□□ -0.49
SS18-201ENST00000269137 SPTBN1Q01082 2364 aaKnown RBP12□□□□□ -0.49
SS18-201ENST00000269137 SMG1Q96Q15 3661 aaKnown RBP12□□□□□ -0.49
SS18-201ENST00000269137 GEMIN2O14893 280 aaKnown RBP12□□□□□ -0.49
SS18-201ENST00000269137 SSX5O60225 188 aa12□□□□□ -0.49
SS18-201ENST00000269137 ROS1P08922 2347 aa12□□□□□ -0.49
SS18-201ENST00000269137 RCVRNP35243 200 aa12□□□□□ -0.49
SS18-201ENST00000269137 GNG2P59768 71 aa12□□□□□ -0.49
SS18-201ENST00000269137 SELENOVP59797 346 aa12□□□□□ -0.49
SS18-201ENST00000269137 ZNF154Q13106 437 aa12□□□□□ -0.49
SS18-201ENST00000269137 PIGYQ3MUY2 71 aa12□□□□□ -0.49
SS18-201ENST00000269137 AGAP6Q5VW22 663 aa12□□□□□ -0.49
SS18-201ENST00000269137 RTN4RL2Q86UN3 420 aa12□□□□□ -0.49
SS18-201ENST00000269137 TMEM229BQ8NBD8 167 aa12□□□□□ -0.49
SS18-201ENST00000269137 PRR7Q8TB68 274 aa12□□□□□ -0.49
SS18-201ENST00000269137 NUDCD2Q8WVJ2 157 aa12□□□□□ -0.49
SS18-201ENST00000269137 TLNRD1Q9H1K6 362 aa12□□□□□ -0.49
SS18-201ENST00000269137 PLK3Q9H4B4 646 aa12□□□□□ -0.49
SS18-201ENST00000269137 ESRP2Q9H6T0 727 aaKnown RBP12□□□□□ -0.49
SS18-201ENST00000269137 MSL2Q9HCI7 577 aa12□□□□□ -0.49
SS18-201ENST00000269137 COPZ2Q9P299 210 aa12□□□□□ -0.49
SS18-201ENST00000269137 NLKQ9UBE8 527 aa12□□□□□ -0.49
SS18-201ENST00000269137 F8VVB4 439 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 F8VWA3 439 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 TPD52L2O43399 206 aaKnown RBP11.99□□□□□ -0.49
SS18-201ENST00000269137 CHATP28329 748 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 FAUP35544 74 aaKnown RBP11.99□□□□□ -0.49
SS18-201ENST00000269137 DAZAP2Q15038 168 aaPredicted RBP11.99□□□□□ -0.49
SS18-201ENST00000269137 CDSNQ15517 529 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 IGFBP7Q16270 282 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 NCMAPQ5T1S8 102 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 VHLLQ6RSH7 139 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 SLC22A25Q6T423 547 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 PLET1Q6UQ28 207 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 TRAPPC6BQ86SZ2 158 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 Q8IYB0 196 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 OR10AD1Q8NGE0 317 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 MRPL24Q96A35 216 aaKnown RBP11.99□□□□□ -0.49
SS18-201ENST00000269137 CA10Q9NS85 328 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 PLEKHJ1Q9NW61 149 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 ANAPC10Q9UM13 185 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 ZFYVE26Q68DK2 2539 aa11.99□□□□□ -0.49
SS18-201ENST00000269137 RELNP78509 3460 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 MEIS3P1A6NDR6 274 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 F5H5P2 479 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 H3BUI4 141 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 PTBP3O95758 552 aaKnown RBP11.98□□□□□ -0.49
SS18-201ENST00000269137 MT-ND4P03905 459 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 GNLYP22749 145 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 PMELP40967 661 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 CBX5P45973 191 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 TAS2R19P59542 299 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 ERVK11-1P61568 191 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 TLE1Q04724 770 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 TFF3Q07654 80 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 CBX3Q13185 183 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 MAB21L1Q13394 359 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 LINC00596Q86U02 117 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 OCSTAMPQ9BR26 566 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 MARVELD1Q9BSK0 173 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 CACNG6Q9BXT2 260 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 MRPL37Q9BZE1 423 aaKnown RBP11.98□□□□□ -0.49
SS18-201ENST00000269137 MMP28Q9H239 520 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 DPAGT1Q9H3H5 408 aa11.98□□□□□ -0.49
SS18-201ENST00000269137 PLSCR5A0PG75 271 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 NOS1APO75052 506 aaPredicted RBP11.97□□□□□ -0.49
SS18-201ENST00000269137 PDCD6O75340 191 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 RHBDL1O75783 438 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 CD74P04233 296 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 AKAIN1P0CW23 69 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 PGA5P0DJD9 388 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 NAT1P18440 290 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 AGAP20933 346 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 FUT3P21217 361 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 GIFP27352 417 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 GRNP28799 593 aaKnown RBP11.97□□□□□ -0.49
SS18-201ENST00000269137 CD200P41217 278 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 ARFRP1Q13795 201 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 MPV17LQ2QL34 196 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 C6orf201Q7Z4U5 140 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 C11orf53Q8IXP5 236 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 FAM58AQ8N1B3 248 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 CREB3L1Q96BA8 519 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 SYT3Q9BQG1 590 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 NRIP2Q9BQI9 281 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 CDIPTO14735 213 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 CD3DP04234 171 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 GRPP07492 148 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 UQCRFS1P47985 274 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 IL13RA2Q14627 380 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 NKAPLQ5M9Q1 402 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 STEAP1BQ6NZ63 245 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 GLCCI1Q86VQ1 547 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 ZNF808Q8N4W9 903 aaPredicted RBP11.97□□□□□ -0.49
SS18-201ENST00000269137 OR4C16Q8NGL9 310 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms