RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RECKO95980 971 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TRGC1P0CF51 173 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NTHL1P78549 312 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TTC32Q5I0X7 151 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 VASH2Q86V25 355 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 RAB37Q96AX2 223 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CA10Q9NS85 328 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CGGBP1Q9UFW8 167 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 MRPS17Q9Y2R5 130 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 GLI3P10071 1580 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TRBV5-5A0A0J9YX44 114 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PTGESO14684 152 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 WISP3O95389 354 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CFDP00746 253 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FAM87AP0C7U9 286 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FUT6P51993 359 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PHLDA2Q53GA4 152 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 EID2BQ96D98 161 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 Q96M85 177 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 RTP3Q9BQQ7 232 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TECRQ9NZ01 308 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NXT1Q9UKK6 140 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PKD1L3Q7Z443 1732 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CA3P07451 260 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 ZNF157P51786 506 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PLXDC1Q8IUK5 500 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR11H4Q8NGC9 324 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 LIPHQ8WWY8 451 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 GAS2L1Q99501 681 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 GINS3Q9BRX5 216 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 ULBP2Q9BZM5 246 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 RGPD8O14715 1765 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CDC14CA4D256 554 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 HCRTR1O43613 425 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 KBTBD11O94819 623 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 YPEL5P62699 121 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 HNRNPA1L2Q32P51 320 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 ANKRD55Q3KP44 614 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C1orf194Q5T5A4 169 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR1L6Q8NGR2 347 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PISDQ9UG56 409 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 ANXA10Q9UJ72 324 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PAM16Q9Y3D7 125 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C3orf85A0A1B0GTC6 90 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 H3BNC9 293 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CXorf1O96002 111 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 APCSP02743 223 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 KLK3P07288 261 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 LIMS1P48059 325 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM211Q6ICI0 200 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TP53INP2Q8IXH6 220 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 UBALD1Q8TB05 177 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TINAGQ9UJW2 476 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SLC22A13Q9Y226 551 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NWD2Q9ULI1 1742 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SMPD2O60906 423 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 IGLV3-27P01718 113 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CSRP3P50461 194 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SKP2Q13309 424 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NECAP1Q8NC96 275 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 DMBX1Q8NFW5 382 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TMEM170AQ8WVE7 144 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FOXJ1Q92949 421 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SH2D2AQ9NP31 389 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TNFRSF12AQ9NP84 129 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 IL19Q9UHD0 177 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 LAMTOR2Q9Y2Q5 125 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TBL2Q9Y4P3 447 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 BAZ2AQ9UIF9 1905 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR4C45A6NMZ5 311 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 NCBP2LA6PVI3 153 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SYNGR2O43760 224 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 IGHEP01854 428 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TRGC2P03986 189 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FGF5P12034 268 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CD22P20273 847 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 HTR5AP47898 357 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C1orf100Q5SVJ3 147 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR5AR1Q8NGP9 310 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR1L3Q8NH93 324 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 MYEOVQ96EZ4 313 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PRSS21Q9Y6M0 314 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 A0A1B0GTI1 187 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 MOSPD3O75425 235 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 CXCL14O95715 111 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 HLA-DRB1P01911 266 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 SLC25A6P12236 298 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 EDN3P14138 238 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PPP2CBP62714 309 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PPP2CAP67775 309 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 GDF6Q6KF10 455 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 FDX2Q6P4F2 183 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OSR2Q8N2R0 312 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C19orf47Q8N9M1 422 aaKnown RBP4.17□□□□□ -1.74
SCN1A-220ENST00000641603 PLPPR1Q8TBJ4 325 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 RHOVQ96L33 236 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 OR1F2PQ96R84 312 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 VSIG4Q9Y279 399 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 TRAV30A0A087WSZ9 112 aa4.17□□□□□ -1.74
SCN1A-220ENST00000641603 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms