RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MTCH1Q9NZJ7 389 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 ZNF581Q9P0T4 197 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 ST3GAL6Q9Y274 331 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 A0A0B4J293 547 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 ATP6V1G2-DDX39BF2Z307 99 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 F8VVB4 439 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 F8VWA3 439 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 GEMIN2O14893 280 aaKnown RBP14.38□□□□□ -0.11
CLN3-252ENST00000636907 MLNRO43193 412 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 CYB5AP00167 134 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 CD3DP04234 171 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 TCRBP04435 133 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 THBDP07204 575 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 AKAIN1P0CW23 69 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 CD40P25942 277 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 TAS2R19P59542 299 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 NKX6-1P78426 367 aaPredicted RBP14.38□□□□□ -0.11
CLN3-252ENST00000636907 NKAPLQ5M9Q1 402 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 C6orf201Q7Z4U5 140 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 MKXQ8IYA7 352 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 ST8SIA4Q92187 359 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 PKIBQ9C010 78 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 TMEM100Q9NV29 134 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 SPEF1Q9Y4P9 236 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 NUBP2Q9Y5Y2 271 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 POLEQ07864 2286 aa14.38□□□□□ -0.11
CLN3-252ENST00000636907 TRAV6A0A075B6T7 132 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 INMT-MINDY4F8WBC2 141 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 AKR7A2O43488 359 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 MPZP25189 248 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 RCVRNP35243 200 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 FAUP35544 74 aaKnown RBP14.37□□□□□ -0.11
CLN3-252ENST00000636907 GLRXP35754 106 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 ASCL1P50553 236 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 RBM11P57052 281 aaKnown RBP14.37□□□□□ -0.11
CLN3-252ENST00000636907 OR8G1Q15617 311 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 FAM76BQ5HYJ3 339 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 ELP2Q6IA86 826 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 STEAP1BQ6NZ63 245 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 Q6ZR03 302 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 OR10AD1Q8NGE0 317 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 RADILQ96JH8 1075 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 NUDT15Q9NV35 164 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 COPZ2Q9P299 210 aa14.37□□□□□ -0.11
CLN3-252ENST00000636907 ZNF107Q9UII5 783 aaPredicted RBP14.37□□□□□ -0.11
CLN3-252ENST00000636907 LRP5LA4QPB2 252 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 TRAPPC2LH3BP13 241 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 HLA-DMAP28067 261 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 RAB25P57735 213 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ADORA2A-AS1P86434 159 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 IL24Q13007 206 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ARFRP1Q13795 201 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 DAZAP2Q15038 168 aaPredicted RBP14.36□□□□□ -0.11
CLN3-252ENST00000636907 LRP11Q86VZ4 500 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 OR4S1Q8NGB4 309 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ZNF488Q96MN9 340 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 HS3ST6Q96QI5 342 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 NEURL2Q9BR09 285 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 HEATR1Q9H583 2144 aaKnown RBP14.36□□□□□ -0.11
CLN3-252ENST00000636907 IFT46Q9NQC8 304 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 PLEKHJ1Q9NW61 149 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 POU2F3Q9UKI9 436 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 NBEAQ8NFP9 2946 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 SERPINE3A8MV23 424 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ZNF736B4DX44 427 aaPredicted RBP14.36□□□□□ -0.11
CLN3-252ENST00000636907 J3QT63 122 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ATXN7O15265 892 aaPredicted RBP14.36□□□□□ -0.11
CLN3-252ENST00000636907 RHBDL1O75783 438 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 CD74P04233 296 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ZNF250P15622 560 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 CHATP28329 748 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 CHRNB4P30926 498 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 SNU13P55769 128 aaKnown RBP14.36□□□□□ -0.11
CLN3-252ENST00000636907 FGF12P61328 243 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ARL6IP1Q15041 203 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 TATDN3Q17R31 274 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 AGAP6Q5VW22 663 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 VHLLQ6RSH7 139 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 TMEM108Q6UXF1 575 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 BTN2A1Q7KYR7 527 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 SCCPDHQ8NBX0 429 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 MSL2Q9HCI7 577 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 HSF4Q9ULV5 492 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ANAPC10Q9UM13 185 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 PCNX1Q96RV3 2341 aa14.36□□□□□ -0.11
CLN3-252ENST00000636907 ESPL1Q14674 2120 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 FAM90A27PA6NNH2 459 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 M0QYG6 137 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 RAB3DO95716 219 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 BTG1P62324 171 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 ZNF154Q13106 437 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 PDCD1Q15116 288 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 OR52W1Q6IF63 320 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 ZNF782Q6ZMW2 699 aaPredicted RBP14.35□□□□□ -0.11
CLN3-252ENST00000636907 SSX8Q7RTT4 187 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 OR56B4Q8NH76 319 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 TMEM171Q8WVE6 324 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 WFIKKN1Q96NZ8 548 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 FAAP24Q9BTP7 215 aa14.35□□□□□ -0.11
CLN3-252ENST00000636907 TINAGL1Q9GZM7 467 aaPredicted RBP14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms