RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 BATF2Q8N1L9 274 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 CSNK2A3Q8NEV1 391 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 OR1K1Q8NGR3 316 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 POM121L2Q96KW2 1035 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 REPIN1Q9BWE0 567 aaKnown RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 ZNF701Q9NV72 531 aaPredicted RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 STARD10Q9Y365 291 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 NOP16Q9Y3C1 178 aaKnown RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 PLSCR5A0PG75 271 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 SFTPBP07988 381 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 AKR1C4P17516 323 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 ZBTB25P24278 435 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 PLP2Q04941 152 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 PDZK1IP1Q13113 114 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 PIGYQ3MUY2 71 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 LIN54Q6MZP7 749 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 ASCL4Q6XD76 172 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 MRPL21Q7Z2W9 205 aaKnown RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 CALHM1Q8IU99 346 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 GCNT2Q8N0V5 402 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 TERB2Q8NHR7 220 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 FAAP24Q9BTP7 215 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 PAPOLGQ9BWT3 736 aaKnown RBP13.51□□□□□ -0.25
CLN3-251ENST00000636853 ZNF175Q9Y473 711 aa13.51□□□□□ -0.25
CLN3-251ENST00000636853 ZFHX2Q9C0A1 2572 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 FIGNL2A6NMB9 653 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 TOR1AO14656 332 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 IGHG3P01860 377 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 CEACAM1P13688 526 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 CXCL2P19875 107 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 CD34P28906 385 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 NPY4RP50391 375 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 ACTBL2Q562R1 376 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 LY6G6FQ5SQ64 297 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 TFAP2EQ6VUC0 442 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 APOBEC3DQ96AK3 386 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 OR51B6Q9H340 312 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 SDHAF2Q9NX18 166 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 DLL3Q9NYJ7 618 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 ZNF629Q9UEG4 869 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 IGKV1D-8A0A087WSZ0 117 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 GEMIN2O14893 280 aaKnown RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 B3GALNT1O75752 331 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 NUP62P37198 522 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 OR3A2P47893 321 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 MALLQ13021 153 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 BRICD5Q6PL45 260 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 C3P1Q6ZMU1 363 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 LYG2Q86SG7 212 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 FBXL14Q8N1E6 418 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 OR51F2Q8NH61 342 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 BCL2L2Q92843 193 aaPredicted RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 EMG1Q92979 244 aaKnown RBP13.5□□□□□ -0.25
CLN3-251ENST00000636853 ELMOD3Q96FG2 381 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 TRIB1Q96RU8 372 aa13.5□□□□□ -0.25
CLN3-251ENST00000636853 TRAV17A0A0B4J275 112 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 C9orf170A2RU37 121 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 A8MXK9 166 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 CCSO14618 274 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 TM4SF5O14894 197 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 EFSO43281 561 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 NDUFA2O43678 99 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 VAMP1P23763 118 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 IL13RA1P78552 427 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 PRDX4Q13162 271 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 PDCD1Q15116 288 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 MPPED2Q15777 294 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 RGS7BPQ6MZT1 257 aaPredicted RBP13.49□□□□□ -0.25
CLN3-251ENST00000636853 RPUSD3Q6P087 351 aaKnown RBP13.49□□□□□ -0.25
CLN3-251ENST00000636853 ARRDC1Q8N5I2 433 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 OR5M9Q8NGP3 310 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 CASTOR1Q8WTX7 329 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 GMPPAQ96IJ6 420 aaPredicted RBP13.49□□□□□ -0.25
CLN3-251ENST00000636853 FGF23Q9GZV9 251 aaPredicted RBP13.49□□□□□ -0.25
CLN3-251ENST00000636853 EHFQ9NZC4 300 aa13.49□□□□□ -0.25
CLN3-251ENST00000636853 MSTNO14793 375 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 ARL6IP1Q15041 203 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 MDP1Q86V88 176 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 OSR2Q8N2R0 312 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 EIF4E3Q8N5X7 224 aaKnown RBP13.48□□□□□ -0.25
CLN3-251ENST00000636853 ZNF611Q8N823 705 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 BHLHE23Q8NDY6 225 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 PXT1Q8NFP0 134 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 OR13G1Q8NGZ3 307 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 DYRK2Q92630 601 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 TECTBQ96PL2 329 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 CLCF1Q9UBD9 225 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 AK3Q9UIJ7 227 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 ZNF891A8MT65 544 aaPredicted RBP13.48□□□□□ -0.25
CLN3-251ENST00000636853 ATP6V1G2-DDX39BF2Z307 99 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 PI3P19957 117 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 NFYAP23511 347 aaPredicted RBP13.48□□□□□ -0.25
CLN3-251ENST00000636853 APLNRP35414 380 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 WNT5AP41221 380 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 NBL1P41271 181 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 NPBWR2P48146 333 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 TAS2R46P59540 309 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 CTAG1AP78358 180 aa13.48□□□□□ -0.25
CLN3-251ENST00000636853 ZNF273Q14593 569 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms