RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DCTN5Q9BTE1 182 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 C19orf24Q9BVV8 132 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 ZNF69Q9UC07 566 aa11.08□□□□□ -0.64
CLK3-213ENST00000563842 IGKV1D-17A0A075B6S4 117 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 TRBV2A0A0J9YWF9 115 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 A0A1B0GW55 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 EFCAB10A6NFE3 127 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 RFPL4AA6NLU0 287 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 RFPL4AL1F8VTS6 287 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L2P0CJ85 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L3P0CJ86 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L4P0CJ87 422 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L5P0CJ88 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L6P0CJ89 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L7P0CJ90 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 LIMS3P0CW19 117 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 LIMS4P0CW20 117 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 IGHV4-38-2P0DP08 117 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 PRDX2P32119 198 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 ARF6P62330 175 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 RPL22L1Q6P5R6 122 aaKnown RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4L9Q6RFH8 374 aaPredicted RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 FIP1L1Q6UN15 594 aaKnown RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 ANGPTL5Q86XS5 388 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 CALHM1Q8IU99 346 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 SERPINA12Q8IW75 414 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 KIR3DL3Q8N743 410 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 LY6G5BQ8NDX9 201 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 TMEM185AQ8NFB2 350 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 OR5D14Q8NGL3 314 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 C8orf46Q8TAG6 207 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 ADAT3Q96EY9 351 aaPredicted RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 TMEM80Q96HE8 168 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 CEP19Q96LK0 163 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 ZMAT3Q9HA38 289 aaKnown RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 HES4Q9HCC6 221 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DUX4Q9UBX2 424 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 ZNF222Q9UK12 451 aa11.07□□□□□ -0.64
CLK3-213ENST00000563842 DIMT1Q9UNQ2 313 aaKnown RBP11.07□□□□□ -0.64
CLK3-213ENST00000563842 TRBV23-1A0A0A0MS06 115 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 A0A1W2PPH5 198 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 H0YJX3 145 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 FCN3O75636 299 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 RGS9O75916 674 aaPredicted RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 ZFPL1O95159 310 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 KNG1P01042 644 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 MT-ND2P03891 347 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 PIPP12273 146 aaPredicted RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 MMP9P14780 707 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 AZGP1P25311 298 aaKnown RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 CAPZA1P52907 286 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 MTCP1P56278 107 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 ERVK11-1P61568 191 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 SRSF2Q01130 221 aaKnown RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 BLMHQ13867 455 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 DGUOKQ16854 277 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 SLC25A26Q70HW3 274 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 ZNRF1Q8ND25 227 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 TBC1D15Q8TC07 691 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 FAM216AQ8WUB2 273 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 GATAD2BQ8WXI9 593 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 CPNE2Q96FN4 548 aaPredicted RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 ZNF488Q96MN9 340 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 OPALINQ96PE5 141 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 SIRPDQ9H106 197 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 VCX3BQ9H321 246 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 ZCCHC4Q9H5U6 513 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 CNOT2Q9NZN8 540 aaKnown RBP11.06□□□□□ -0.64
CLK3-213ENST00000563842 ONECUT1Q9UBC0 465 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 DHDHQ9UQ10 334 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 MAB21L2Q9Y586 359 aa11.06□□□□□ -0.64
CLK3-213ENST00000563842 IGKV1-27A0A075B6S5 117 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 A0A1W2PQ09 198 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 ERICH4A6NGS2 130 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 H0YHG0 523 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 ALX3O95076 343 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 CD2P06729 351 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 SFTPBP07988 381 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 CHRM2P08172 466 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 SELLP14151 372 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 ETV1P50549 477 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 TUSC1Q2TAM9 212 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 C1orf122Q6ZSJ8 110 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 PARP16Q8N5Y8 322 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 SIGLECL1Q8N7X8 197 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 OR51A4Q8NGJ6 313 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 OR10AC1Q8NH08 325 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 OR52N1Q8NH53 320 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 GPR148Q8TDV2 347 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 TSEN15Q8WW01 171 aaKnown RBP11.05□□□□□ -0.64
CLK3-213ENST00000563842 TBX15Q96SF7 602 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 PDCD1LG2Q9BQ51 273 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 FAM234AQ9H0X4 552 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 RHOFQ9HBH0 211 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 PLCXD1Q9NUJ7 323 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 BABAM2Q9NXR7 383 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 MTCH1Q9NZJ7 389 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 OR14J1Q9UGF5 321 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 GLS2Q9UI32 602 aa11.05□□□□□ -0.64
CLK3-213ENST00000563842 IGHV3OR16-10A0A075B7F0 116 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms