RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	CEP78	Q5JTW2	689 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF782	Q6ZMW2	699 aa	Predicted RBP	10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	ACP7	Q6ZNF0	438 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	KRT74	Q7RTS7	529 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	CENPV	Q7Z7K6	275 aa	Predicted RBP	10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	CD177	Q8N6Q3	437 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR13D1	Q8NGV5	346 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR4Q3	Q8NH05	313 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	FAM81A	Q8TBF8	368 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	THEM6	Q8WUY1	208 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	AQP3	Q92482	292 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	NRBF2	Q96F24	287 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	RCC1L	Q96I51	464 aa	Known RBP	10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689		U3KQV3	271 aa		10.19	□□□□□ -0.78
SHMT2-223	ENST00000556689	ARRDC5	A6NEK1	342 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	SAC3D1	A6NKF1	404 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	RIIAD1	A6NNX1	92 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	C17orf98	A8MV24	154 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	F2RL2	O00254	374 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF3	P17036	446 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF770	Q6IQ21	691 aa	Predicted RBP	10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	HAGHL	Q6PII5	290 aa	Predicted RBP	10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	MOB3C	Q70IA8	216 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	AMIGO2	Q86SJ2	522 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	AQP11	Q8NBQ7	271 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	GIPC3	Q8TF64	312 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	ITFG2	Q969R8	447 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	OTULIN	Q96BN8	352 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	MED20	Q9H944	212 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	LYVE1	Q9Y5Y7	322 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	COL7A1	Q02388	2944 aa		10.18	□□□□□ -0.78
SHMT2-223	ENST00000556689	TCRBV4S1A1T	A0A5B7	111 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR5B21	A6NL26	309 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	FAM183A	A6NL82	134 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	SYNGR1	O43759	233 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	SOX14	O95416	240 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	TK1	P04183	234 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	LYN	P07948	512 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	ANXA8	P13928	327 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	DYNLT3	P51808	116 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR12D2	P58182	307 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF273	Q14593	569 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	SMIM21	Q3B7S5	101 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	DMRTC1	Q5HYR2	192 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF454	Q8N9F8	522 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	POC1A	Q8NBT0	407 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR10G2	Q8NGC3	310 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR11H6	Q8NGC7	330 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR8B12	Q8NGG6	310 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	CIB1	Q99828	191 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	TEX12	Q9BXU0	123 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR51V1	Q9H2C8	321 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	NIPAL2	Q9H841	368 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	CMC2	Q9NRP2	79 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	OAZ3	Q9UMX2	235 aa		10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.17	□□□□□ -0.78
SHMT2-223	ENST00000556689	ODF3B	A8MYP8	253 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689		E9PQ18	207 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	CLIC3	O95833	236 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	HSPA13	P48723	471 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	DLX6	P56179	175 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	RIPPLY1	Q0D2K3	151 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	DYNC1I2	Q13409	638 aa	Known RBP	10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	MICA	Q29983	383 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	TMEM95	Q3KNT9	176 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	LDLRAD2	Q5SZI1	272 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF626	Q68DY1	528 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZBTB49	Q6ZSB9	765 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	PACRGL	Q8N7B6	248 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	OTOS	Q8NHW6	89 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF488	Q96MN9	340 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	OR8B4	Q96RC9	309 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	B9D2	Q9BPU9	175 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	KRT84	Q9NSB2	600 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689	HILPDA	Q9Y5L2	63 aa		10.16	□□□□□ -0.78
SHMT2-223	ENST00000556689		A0A0U1RQV5	110 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	ACOD1	A6NK06	481 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	NOS1AP	O75052	506 aa	Predicted RBP	10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	NXPH2	O95156	264 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	RBP4	P02753	201 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PGA5	P0DJD9	388 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF728	P0DKX0	622 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PIP	P12273	146 aa	Predicted RBP	10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	ATP6V1B1	P15313	513 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	AZGP1	P25311	298 aa	Known RBP	10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PEX2	P28328	305 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	VHL	P40337	213 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	CEBPD	P49716	269 aa	Predicted RBP	10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PSMA6	P60900	246 aa	Known RBP	10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	EGFEM1P	Q0D2K5	195 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	TCTEX1D4	Q5JR98	221 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PLCXD3	Q63HM9	321 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	ZNF573	Q86YE8	665 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	PRRG3	Q9BZD7	231 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	GABARAPL1	Q9H0R8	117 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	INPP5E	Q9NRR6	644 aa		10.15	□□□□□ -0.78
SHMT2-223	ENST00000556689	FAM90A22P	A8MWA6	464 aa		10.14	□□□□□ -0.79
SHMT2-223	ENST00000556689		K7N7A8	449 aa		10.14	□□□□□ -0.79
SHMT2-223	ENST00000556689	CASQ2	O14958	399 aa	Predicted RBP	10.14	□□□□□ -0.79
SHMT2-223	ENST00000556689	SELENOF	O60613	162 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms