RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SFTPBP07988 381 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 HOXC12P31275 282 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 SNU13P55769 128 aaKnown RBP22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 EIF2S3LQ2VIR3 472 aaKnown RBP22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 NKAPLQ5M9Q1 402 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 SLC25A26Q70HW3 274 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 TMED4Q7Z7H5 227 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 SLC25A42Q86VD7 318 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 FBXL14Q8N1E6 418 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 CYYR1Q96J86 154 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 OR2A7Q96R45 310 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 TMEM246Q9BRR3 403 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 ST6GALNAC5Q9BVH7 336 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 SLA2Q9H6Q3 261 aa22.63■■□□□ 1.21
CCDC88C-205ENST00000553403 CGAP01215 116 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 IDH3GP51553 393 aaPredicted RBP22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 PER3P56645 1201 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 KRTCAP3Q53RY4 240 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 SEM1Q6ZVN7 128 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 C17orf78Q8N4C9 275 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 WDR31Q8NA23 367 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 OR2AK2Q8NG84 335 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 OR5P3Q8WZ94 311 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 STARD4Q96DR4 205 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 ST3GAL6Q9Y274 331 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 DOCK7Q96N67 2140 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 OR2AT4A6NND4 320 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 ZNF732B4DXR9 585 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 SMPD2O60906 423 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 CELA3BP08861 270 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 GPM6AP51674 278 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 RBM11P57052 281 aaKnown RBP22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 ELP2Q6IA86 826 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 LAMTOR1Q6IAA8 161 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 FAHD2BQ6P2I3 314 aaPredicted RBP22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 SPACA3Q8IXA5 215 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 TERB2Q8NHR7 220 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 FAHD2AQ96GK7 314 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 CA10Q9NS85 328 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 PIPOXQ9P0Z9 390 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 EDARQ9UNE0 448 aa22.62■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A10PA6NDY2 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A18PA6NE21 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A16PA6NEW6 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A20PA6NIJ5 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A8PA6NJQ4 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A7PA6NKC0 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 OR5B21A6NL26 309 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A22PA8MWA6 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A12PA8MX19 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A5PA8MXJ8 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A23PA8MXZ1 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 PRSS44E7EML9 344 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A15PP0C7V4 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A13PP0C7W8 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A14PP0C7W9 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 FAM90A24PP0C7X0 464 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 DTYMKP23919 212 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 DNASE1P24855 282 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 PMELP40967 661 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 OR3A3P47888 321 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 RAP2BP61225 183 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 MPPED2Q15777 294 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 PIGYQ3MUY2 71 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 MYPOPQ86VE0 399 aaPredicted RBP22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 TMEM17Q86X19 198 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 MKXQ8IYA7 352 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 C9orf62Q8N4C0 152 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 OBP2BQ9NPH6 170 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 MGAT4AQ9UM21 535 aa22.61■■□□□ 1.21
CCDC88C-205ENST00000553403 ZZEF1O43149 2961 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 A0A1W2PR80 420 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 CEACAM18A8MTB9 384 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 GEMIN2O14893 280 aaKnown RBP22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 PPP1CBP62140 327 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 P2RY6Q15077 328 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 C1orf185Q5T7R7 199 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 C12orf45Q8N5I9 185 aaPredicted RBP22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 ASCC1Q8N9N2 400 aaKnown RBP22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 ZNF610Q8N9Z0 462 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 OR5AP2Q8NGF4 316 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 OR2T35Q8NGX2 323 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 FAAP24Q9BTP7 215 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 GON7Q9BXV9 100 aa22.6■■□□□ 1.21
CCDC88C-205ENST00000553403 PDCD6O75340 191 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 IGKV3-15P01624 115 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 HAAOP46952 286 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 Q5BKY6 102 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 NAXEQ8NCW5 288 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 OR10AD1Q8NGE0 317 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 ASB13Q8WXK3 278 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 OR51B6Q9H340 312 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 ZNF629Q9UEG4 869 aaPredicted RBP22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 ZNF230Q9UIE0 474 aaPredicted RBP22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 AK3Q9UIJ7 227 aa22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 ANKRD11Q6UB99 2663 aaPredicted RBP22.59■■□□□ 1.21
CCDC88C-205ENST00000553403 RRP8O43159 456 aaKnown RBP22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 IL32P24001 234 aa22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 TSC22D1Q15714 1073 aa22.58■■□□□ 1.21
CCDC88C-205ENST00000553403 NHLRC3Q5JS37 347 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms