RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 ZNF367Q7RTV3 350 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 NANOGNBQ7Z5D8 188 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 VMO1Q7Z5L0 202 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 NDUFA11Q86Y39 141 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 OR5AS1Q8N127 324 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 Q8N2B8 174 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 SPERTQ8NA61 448 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 PAPD5Q8NDF8 572 aaKnown RBP2.85□□□□□ -1.95
LIMA1-206ENST00000550611 C19orf18Q8NEA5 215 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 OR5R1Q8NH85 324 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 OR1F12Q8NHA8 337 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 PFN4Q8NHR9 129 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 C8orf46Q8TAG6 207 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 SUN5Q8TC36 379 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 TMEM239Q8WW34 195 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 SLC7A6Q92536 515 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 SGTBQ96EQ0 304 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 C16orf45Q96MC5 204 aaPredicted RBP2.85□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF582Q96NG8 517 aaPredicted RBP2.85□□□□□ -1.95
LIMA1-206ENST00000550611 OR52B2Q96RD2 323 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 ASCL2Q99929 193 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 ECSITQ9BQ95 431 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 SEMA6AQ9H2E6 1030 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 PPA2Q9H2U2 334 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 RANBP3Q9H6Z4 567 aaPredicted RBP2.85□□□□□ -1.95
LIMA1-206ENST00000550611 PTTG3PQ9NZH4 202 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 RPUSD1Q9UJJ7 312 aaKnown RBP2.85□□□□□ -1.95
LIMA1-206ENST00000550611 MAB21L2Q9Y586 359 aa2.85□□□□□ -1.95
LIMA1-206ENST00000550611 DOCK11Q5JSL3 2073 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 TANC2Q9HCD6 1990 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ALMS1Q8TCU4 4167 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 TRAV38-1A0A0B4J264 116 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 A0A1B0GW55 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GAGE12JA6NER3 117 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ANKRD61A6NGH8 418 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OOEPA6NGQ2 149 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 A6NIZ1 184 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 NPFFO15130 113 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RER1O15258 196 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 POLR3GO15318 223 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ADAM20O43506 726 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 NDUFB4O95168 129 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR5F1O95221 314 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GYPAP02724 150 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OPN1SWP03999 348 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 HLA-DPB1P04440 258 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 VIMP08670 466 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L2P0CJ85 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L3P0CJ86 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L4P0CJ87 422 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L5P0CJ88 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L6P0CJ89 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L7P0CJ90 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 CD28P10747 220 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 UMPSP11172 480 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 IRF2P14316 349 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 IGLL1P15814 213 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ARSBP15848 533 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ZNF26P17031 533 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 AQP1P29972 269 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GUCA1AP43080 201 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RANBP1P43487 201 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 TGM4P49221 684 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 CAMPP49913 170 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GZMMP51124 257 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 UBE2E1P51965 193 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DLX1P56177 255 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ARPC4P59998 168 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RAP1BP61224 184 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 RAP1AP62834 184 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ELF3P78545 371 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ACSM1Q08AH1 577 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 EGFEM1PQ0D2K5 195 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 SCRN3Q0VDG4 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GK2Q14410 553 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 IRF3Q14653 427 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 KCNJ8Q15842 424 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 NSUN5P1Q3KNT7 163 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 ANKDD1AQ495B1 522 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 BEND6Q5SZJ8 279 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PRAMEF6Q5VXH4 476 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 HCP5Q6MZN7 132 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DUX4L9Q6RFH8 374 aaPredicted RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 EPGNQ6UW88 154 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 SHFQ7M4L6 423 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 FAM122BQ7Z309 247 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PATL1Q86TB9 770 aaKnown RBP2.84□□□□□ -1.95
LIMA1-206ENST00000550611 C11orf53Q8IXP5 236 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PDZD9Q8IXQ8 264 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 FGFRL1Q8N441 504 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 PNKDQ8N490 385 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 GCSAMQ8N6F7 178 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 KLHDC1Q8N7A1 406 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 POC5Q8NA72 575 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR4F17Q8NGA8 305 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR4S1Q8NGB4 309 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 OR5L1Q8NGL2 311 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 FAM81AQ8TBF8 368 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 DYDC1Q8WWB3 177 aa2.84□□□□□ -1.95
LIMA1-206ENST00000550611 LZICQ8WZA0 190 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms