RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	UQCC1	Q9NVA1	299 aa		11.36	□□□□□ -0.59
CPSF7-223	ENST00000544669	OR5AC2	Q9NZP5	309 aa		11.36	□□□□□ -0.59
CPSF7-223	ENST00000544669	TMED3	Q9Y3Q3	217 aa		11.36	□□□□□ -0.59
CPSF7-223	ENST00000544669	ALPK2	Q86TB3	2170 aa		11.36	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM230A	A0A1W2PPH8	454 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669		E9PLN8	166 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	ATP6V1G2-DDX39B	F2Z307	99 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	TERT	O14746	1132 aa	Known RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	HEXA	P06865	529 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	PI3	P19957	117 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	CLDN15	P56746	228 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	B3GALT5-AS1	P59052	145 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAM76B	Q5HYJ3	339 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	DHRS7B	Q6IAN0	325 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	KDF1	Q8NAX2	398 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	LINC00470	Q9BZP3	86 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	MS4A7	Q9GZW8	240 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	OPA3	Q9H6K4	179 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	BOK	Q9UMX3	212 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	IGHV3-15	A0A0B4J1V0	119 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZNF716	A6NP11	495 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	CYTIP	O60759	359 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	PDCD6	O75340	191 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SERPINA7	P05543	415 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	FCGR3A	P08637	254 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	CTXN2	P0C2S0	81 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SEC11B	P0C7V7	166 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	COX5B	P10606	129 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	FUT3	P21217	361 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	DUSP1	P28562	367 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	PTGER4	P35408	488 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	CYB561	P49447	251 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	PIGP	P57054	158 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	PDZK1IP1	Q13113	114 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SNAI3	Q3KNW1	292 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669		Q6ZS49	121 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SKA3	Q8IX90	412 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SPSB4	Q96A44	273 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	ABHD14B	Q96IU4	210 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SPIN2A	Q99865	258 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	SPIN2B	Q9BPZ2	258 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	OR2H1	Q9GZK4	316 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	RHOF	Q9HBH0	211 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	OR2S2	Q9NQN1	319 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	B4GALT7	Q9UBV7	327 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	AK3	Q9UIJ7	227 aa		11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	MCTS1	Q9ULC4	181 aa	Known RBP	11.35	□□□□□ -0.59
CPSF7-223	ENST00000544669	RALGAPA1	Q6GYQ0	2036 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	CCDC187	A0A096LP49	1063 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669		H7C1Q1	480 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZNF708	P17019	499 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZNF32	P17041	273 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	KLK2	P20151	261 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	FCGR2C	P31995	323 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	P2RY1	P47900	373 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	HERV-K104	P61576	105 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	GGNBP1	Q5YKI7	109 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	RAB11FIP2	Q7L804	512 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	ABCA7	Q8IZY2	2146 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669		Q8NFD4	153 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	ZC3H10	Q96K80	434 aa	Known RBP	11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	FAAP24	Q9BTP7	215 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	SRXN1	Q9BYN0	137 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	STRADB	Q9C0K7	418 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	RIMS4	Q9H426	269 aa	Predicted RBP	11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	ABI3	Q9P2A4	366 aa		11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	STRAP	Q9Y3F4	350 aa	Known RBP	11.34	□□□□□ -0.59
CPSF7-223	ENST00000544669	GON4L	Q3T8J9	2241 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	DUXB	A0A1W2PPF3	345 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	LAMTOR5	O43504	91 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	GPR137B	O60478	399 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	DIRAS3	O95661	229 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	PLAT	P00750	562 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	DBH	P09172	617 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	PVALB	P20472	110 aa	Predicted RBP	11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	DVL1P1	P54792	670 aa	Predicted RBP	11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	PSG4	Q00888	419 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	GNMT	Q14749	295 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	TAF9	Q16594	264 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF774	Q6NX45	483 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	LIAT1	Q6ZQX7	453 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	DPPA2	Q7Z7J5	298 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	GGN	Q86UU5	652 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	MOB3A	Q96BX8	217 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	C1QTNF5	Q9BXJ0	243 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	SMDT1	Q9H4I9	107 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	GPR35	Q9HC97	309 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	ACKR4	Q9NPB9	350 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	MLX	Q9UH92	298 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	ST3GAL6	Q9Y274	331 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	PRELID3B	Q9Y3B1	194 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	KPTN	Q9Y664	436 aa		11.33	□□□□□ -0.6
CPSF7-223	ENST00000544669	hCG_38984	A0A1B0GV85	526 aa		11.32	□□□□□ -0.6
CPSF7-223	ENST00000544669	MSGN1	A6NI15	193 aa		11.32	□□□□□ -0.6
CPSF7-223	ENST00000544669	RNASEK-C17orf49	H0YIS7	233 aa		11.32	□□□□□ -0.6
CPSF7-223	ENST00000544669	ST8SIA3	O43173	380 aa		11.32	□□□□□ -0.6
CPSF7-223	ENST00000544669	MED6	O75586	246 aa		11.32	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms