RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 C3orf36Q3SXR2 165 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 ACSF3Q4G176 576 aaPredicted RBP7.18□□□□□ -1.26
CHD4-208ENST00000540960 FAM120AOSQ5T036 256 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 OTPQ5XKR4 325 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 OLFML2AQ68BL7 652 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 BTN2A1Q7KYR7 527 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 LYPD6Q86Y78 171 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 SAXO1Q8IYX7 474 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 TMEM229BQ8NBD8 167 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 PXT1Q8NFP0 134 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 OR52N4Q8NGI2 321 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 AKR7LQ8NHP1 331 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 CCDC107Q8WV48 283 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 TMEM171Q8WVE6 324 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 PPP1R14AQ96A00 147 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 BORCS8Q96FH0 119 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 SCGB3A2Q96PL1 93 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 SLC25A21Q9BQT8 299 aaPredicted RBP7.18□□□□□ -1.26
CHD4-208ENST00000540960 TMEM59Q9BXS4 323 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 METTL9Q9H1A3 318 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 PIGMQ9H3S5 423 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 AUNIPQ9H7T9 357 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 CDH20Q9HBT6 801 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 ING3Q9NXR8 418 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 SCP2D1Q9UJQ7 156 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 PROCRQ9UNN8 238 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 AMDHD2Q9Y303 409 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 MPC1Q9Y5U8 109 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 FREM3P0C091 2139 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 DOCK7Q96N67 2140 aa7.18□□□□□ -1.26
CHD4-208ENST00000540960 MEIOCA2RUB1 952 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 MBD3L3A6NE82 208 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 OR5B21A6NL26 309 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ANKRD30BLA7E2S9 258 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 POM121CA8CG34 1229 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 SERPINE3A8MV23 424 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TMEM14DPA8MWL7 114 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 DISC1C4P0D8 188 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 EEF1E1-BLOC1S5C9J1V9 151 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 LMX1BO60663 402 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ICMTO60725 284 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 VENTXO95231 258 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TGM6O95932 706 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 IL18BPO95998 194 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 CD3GP09693 182 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 SLC2A1P11166 492 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 NAT2P11245 290 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 GTF2F2P13984 249 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ZNF16P17020 682 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 PSMB1P20618 241 aaKnown RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 NTF4P34130 210 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TIMP3P35625 211 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 PMELP40967 661 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 RAD52P43351 418 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 MAGEB1P43366 347 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 MTCP1P56278 107 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 MRPS15P82914 257 aaKnown RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 TBRG1Q3YBR2 411 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 FBLN7Q53RD9 439 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TMEM42Q69YG0 159 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 C11orf88Q6PI97 169 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 GLIPR1L1Q6UWM5 242 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 PLXDC2Q6UX71 529 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TFAP2EQ6VUC0 442 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TMEM17Q86X19 198 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ZNF584Q8IVC4 421 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 CADM3Q8N126 398 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 OR10R2Q8NGX6 335 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 OR52I2Q8NH67 350 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 MBD3L2Q8NHZ7 208 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 GPX8Q8TED1 209 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 TNFAIP8L1Q8WVP5 186 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ASB13Q8WXK3 278 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ZNF837Q96EG3 531 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 TRAF4Q9BUZ4 470 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 SFXN3Q9BWM7 321 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 PLK3Q9H4B4 646 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.17□□□□□ -1.26
CHD4-208ENST00000540960 MCUBQ9NWR8 336 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 IL36GQ9NZH8 169 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 JKAMPQ9P055 326 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 ZNF629Q9UEG4 869 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 CGGBP1Q9UFW8 167 aaPredicted RBP7.17□□□□□ -1.26
CHD4-208ENST00000540960 SPEF1Q9Y4P9 236 aa7.17□□□□□ -1.26
CHD4-208ENST00000540960 A0A0B4J203 849 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 hCG_38984A0A1B0GV85 526 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 C5orf49A4QMS7 147 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A10PA6NDY2 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A18PA6NE21 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A16PA6NEW6 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A20PA6NIJ5 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A8PA6NJQ4 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A7PA6NKC0 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A22PA8MWA6 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A12PA8MX19 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A5PA8MXJ8 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 FAM90A23PA8MXZ1 464 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 ZNF736B4DX44 427 aaPredicted RBP7.16□□□□□ -1.26
CHD4-208ENST00000540960 GMDSO60547 372 aa7.16□□□□□ -1.26
CHD4-208ENST00000540960 NDUFS7O75251 213 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms