RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SLC17A1Q14916 467 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 DUSP28Q4G0W2 176 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 CYP2G1PQ6ZSU1 146 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 C20orf196Q8IYI0 205 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 OR13G1Q8NGZ3 307 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 ZPLD1Q8TCW7 415 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 IL22RA2Q969J5 263 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 APH1AQ96BI3 265 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 RASD2Q96D21 266 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 TXN2Q99757 166 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 RRAGCQ9HB90 399 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 EHFQ9NZC4 300 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 CES1P1Q9UKY3 287 aa10.94□□□□□ -0.66
USP3-203ENST00000538686 CHD3Q12873 2000 aaKnown RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 CXorf51AA0A1B0GTR3 108 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 GLOD5A6NK44 160 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 IFNA1P01562 189 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 RAB28P51157 221 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 ERVS71-1P61550 626 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 SUMO1P63165 101 aaKnown RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 DUSP2Q05923 314 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 GNMTQ14749 295 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 SMIM21Q3B7S5 101 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 ZNF658BQ4V348 819 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 PET117Q6UWS5 81 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 LINC00114Q6XXX2 140 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 RTN4RL1Q86UN2 441 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 MCEMP1Q8IX19 187 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 FBXL14Q8N1E6 418 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 FAM216AQ8WUB2 273 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 TMEM56Q96MV1 263 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 CLUHP3Q96NS8 147 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 OR51I2Q9H344 312 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 TUBG2Q9NRH3 451 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 SLC35D1Q9NTN3 355 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 MRPL27Q9P0M9 148 aaKnown RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 RNF115Q9Y4L5 304 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 TMEM56-RWDD3S4R434 201 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 TRIP12Q14669 1992 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 OR6C6A6NF89 314 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 C9orf172C9J069 976 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 H3BSH0 61 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 TOX4O94842 621 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 DDAH2O95865 285 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 NGFRP08138 427 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 AMY2BP19961 511 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 DUSP1P28562 367 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 PTGER1P34995 402 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 PTGER4P35408 488 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 DCAF7P61962 342 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 EWSR1Q01844 656 aaKnown RBP eCLIP10.93□□□□□ -0.66
USP3-203ENST00000538686 EMC4Q5J8M3 183 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 WDR25Q64LD2 544 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 TCF24Q7RTU0 167 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 LYPD6Q86Y78 171 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 OR5B3Q8NH48 314 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 THAP3Q8WTV1 239 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 OVCA2Q8WZ82 227 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 GJD4Q96KN9 370 aaPredicted RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 SGCZQ96LD1 299 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 MTIF3Q9H2K0 278 aaKnown RBP10.93□□□□□ -0.66
USP3-203ENST00000538686 PRSS50Q9UI38 385 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 HHLA2Q9UM44 414 aa10.93□□□□□ -0.66
USP3-203ENST00000538686 CENPVL1A0A0U1RR11 272 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 NPIPA7E9PJI5 369 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 CTSDP07339 412 aaPredicted RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 C8AP07357 584 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 NPIPA8P0DM63 369 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 GZMHP20718 246 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 CDKN2AP42771 156 aaKnown RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 RPS4XP62701 263 aaKnown RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 QRFPP83859 136 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ARL6IP1Q15041 203 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 TCTN1Q2MV58 587 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 BSXQ3C1V8 233 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 C1QL3Q5VWW1 255 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ZNF793Q6ZN11 406 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 Q6ZN92 141 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 PNKDQ8N490 385 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ARHGEF39Q8N4T4 335 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 OR5D18Q8NGL1 313 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 OTOSQ8NHW6 89 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 TMEM234Q8WY98 164 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 BCL2L2Q92843 193 aaPredicted RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 SLAMF6Q96DU3 332 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ZNF845Q96IR2 970 aaPredicted RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 CAPNS2Q96L46 248 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ZNF681Q96N22 645 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 MACROD1Q9BQ69 325 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ABHD14AQ9BUJ0 271 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ELOVL3Q9HB03 270 aa10.92□□□□□ -0.66
USP3-203ENST00000538686 ABT1Q9ULW3 272 aaKnown RBP10.92□□□□□ -0.66
USP3-203ENST00000538686 IGHV1-69-2A0A0G2JMI3 117 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 CRYM-AS1A6NIL9 109 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 OR5B21A6NL26 309 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 VSTM2BA6NLU5 285 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 TIMP1P01033 207 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 C8orf89P0DMQ9 161 aa10.91□□□□□ -0.66
USP3-203ENST00000538686 HIST1H1TP22492 207 aaPredicted RBP10.91□□□□□ -0.66
USP3-203ENST00000538686 GNRHRP30968 328 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms