RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 NUP37Q8NFH4 326 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 AQP3Q92482 292 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 PKIBQ9C010 78 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 SELENOIQ9C0D9 397 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 C11orf54Q9H0W9 315 aaPredicted RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 RHOFQ9HBH0 211 aa18.09■□□□□ 0.49
VPS28-212ENST00000530836 RBFOX1Q9NWB1 397 aaKnown RBP18.09■□□□□ 0.49
VPS28-212ENST00000530836 LINC00854A0A1B0GVQ3 168 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 TMEM210A6NLX4 147 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 H7C417 338 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 ANGPTL7O43827 346 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 HTR3BO95264 441 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 FABP6P51161 128 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 ACTBP60709 375 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 ACTG1P63261 375 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 OR8G1Q15617 311 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 MOGAT2Q3SYC2 334 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 FAM76BQ5HYJ3 339 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 SLC25A26Q70HW3 274 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 CALHM1Q8IU99 346 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 WFDC8Q8IUA0 241 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 OR10K1Q8NGX5 313 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 RAB3CQ96E17 227 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 ZC3HAV1LQ96H79 300 aaKnown RBP18.08■□□□□ 0.48
VPS28-212ENST00000530836 ADAT1Q9BUB4 502 aaKnown RBP18.08■□□□□ 0.48
VPS28-212ENST00000530836 MTFP1Q9UDX5 166 aa18.08■□□□□ 0.48
VPS28-212ENST00000530836 A0A1W2PP11 408 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 LRP5LA4QPB2 252 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 PLATP00750 562 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 THBDP07204 575 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 SELENOVP59797 346 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 IL24Q13007 206 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 CDNFQ49AH0 187 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 ELP2Q6IA86 826 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 OSR2Q8N2R0 312 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 GPX8Q8TED1 209 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 Q96M66 194 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 NICN1Q9BSH3 213 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 FGF23Q9GZV9 251 aaPredicted RBP18.07■□□□□ 0.48
VPS28-212ENST00000530836 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.07■□□□□ 0.48
VPS28-212ENST00000530836 ZNF107Q9UII5 783 aaPredicted RBP18.07■□□□□ 0.48
VPS28-212ENST00000530836 CACNG2Q9Y698 323 aa18.07■□□□□ 0.48
VPS28-212ENST00000530836 ASH1LQ9NR48 2969 aaKnown RBP18.07■□□□□ 0.48
VPS28-212ENST00000530836 A0A1B0GWJ7 208 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 IGHV3-13P01766 116 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 CSF1P09603 554 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 MPZP25189 248 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 KLF9Q13886 244 aaPredicted RBP18.06■□□□□ 0.48
VPS28-212ENST00000530836 PNLIPRP3Q17RR3 467 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 RNASE12Q5GAN4 147 aaKnown RBP18.06■□□□□ 0.48
VPS28-212ENST00000530836 Q6ZTK2 550 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 NRARPQ7Z6K4 114 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 OR13G1Q8NGZ3 307 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 ENKURQ8TC29 256 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 OR51I2Q9H344 312 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 KLK11Q9UBX7 282 aa18.06■□□□□ 0.48
VPS28-212ENST00000530836 FLNBO75369 2602 aaKnown RBP18.06■□□□□ 0.48
VPS28-212ENST00000530836 IGKV1-12A0A0C4DH73 117 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 A0A1B0GVG6 124 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 NAP1L6A6NFF2 107 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 H3BUI4 141 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 IGKV1D-12P01611 117 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 HIST1H1DP16402 221 aaKnown RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 RFX2P48378 723 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 GCDHQ92947 438 aaPredicted RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 SEH1LQ96EE3 360 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 RADILQ96JH8 1075 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 PLK3Q9H4B4 646 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 POLDIP2Q9Y2S7 368 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 PKDREJQ9NTG1 2253 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 A0A0A6YYD4 124 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 ANKRD20A5PA0PJZ0 165 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 MEIOCA2RUB1 952 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A10PA6NDY2 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A18PA6NE21 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A16PA6NEW6 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A20PA6NIJ5 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A8PA6NJQ4 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A7PA6NKC0 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FOXI3A8MTJ6 420 aaPredicted RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A22PA8MWA6 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A12PA8MX19 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A5PA8MXJ8 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A23PA8MXZ1 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 ATP6V1G2-DDX39BF2Z307 99 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 TRAPPC2LH3BP13 241 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 J3QT63 122 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 SOCS1O15524 211 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A15PP0C7V4 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A13PP0C7W8 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A14PP0C7W9 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 FAM90A24PP0C7X0 464 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 KLF3P57682 345 aaPredicted RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 DAZAP2Q15038 168 aaPredicted RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 ALKBH6Q3KRA9 238 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 ZNF787Q6DD87 383 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 CCBE1Q6UXH8 406 aaPredicted RBP18.05■□□□□ 0.48
VPS28-212ENST00000530836 DUSP18Q8NEJ0 188 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 TMEM171Q8WVE6 324 aa18.05■□□□□ 0.48
VPS28-212ENST00000530836 DVL3Q92997 716 aaPredicted RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms