RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NPBWR2P48146 333 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 ZNF154Q13106 437 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 TRIM16LQ309B1 348 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 ELP2Q6IA86 826 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 Q6ZTK2 550 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 FBXL14Q8N1E6 418 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 TOMM5Q8N4H5 51 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 MINDY2Q8NBR6 621 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 CHPT1Q8WUD6 406 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 POLDIP2Q9Y2S7 368 aa17.88■□□□□ 0.45
VPS28-208ENST00000527797 SHISA9B4DS77 424 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 SULT1C2O00338 296 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 ORC5O43913 435 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 GABRR1P24046 479 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 BLVRBP30043 206 aaPredicted RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 TMEM50BP56557 158 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 OR2Z1Q8NG97 314 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 POM121Q96HA1 1249 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 SCPEP1Q9HB40 452 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 ST3GAL6Q9Y274 331 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 TMEM235A6NFC5 223 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 PLA2G10O15496 165 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 RBBP9O75884 186 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 PTTG1O95997 202 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 MELTFP08582 738 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 GSTP1P09211 210 aaKnown RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 HIST1H1DP16402 221 aaKnown RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 GNB3P16520 340 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 MAB21L1Q13394 359 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 ARL6IP1Q15041 203 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 OXA1LQ15070 435 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 ADIPOQQ15848 244 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 TAF9Q16594 264 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 NKPD1Q17RQ9 610 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 DMRTC2Q8IXT2 367 aaPredicted RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 CENPSQ8N2Z9 138 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 PLK3Q9H4B4 646 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 RHOFQ9HBH0 211 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 NPDC1Q9NQX5 325 aaPredicted RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 KLK11Q9UBX7 282 aa17.87■□□□□ 0.45
VPS28-208ENST00000527797 RBMX2Q9Y388 322 aaKnown RBP17.87■□□□□ 0.45
VPS28-208ENST00000527797 ZSCAN5BA6NJL1 495 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 FOXI3A8MTJ6 420 aaPredicted RBP17.86■□□□□ 0.45
VPS28-208ENST00000527797 CDIPTO14735 213 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 RHBDL1O75783 438 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 OR4A8P0C604 315 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 GSTT2BP0CG30 244 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 SRP9P49458 86 aaKnown RBP17.86■□□□□ 0.45
VPS28-208ENST00000527797 FGF12P61328 243 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 GUCA2AQ02747 115 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 PIGYQ3MUY2 71 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 PLAC9Q5JTB6 97 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 BATF2Q8N1L9 274 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 GPX8Q8TED1 209 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 GTF3AQ92664 365 aaKnown RBP17.86■□□□□ 0.45
VPS28-208ENST00000527797 SEH1LQ96EE3 360 aa17.86■□□□□ 0.45
VPS28-208ENST00000527797 RBFOX1Q9NWB1 397 aaKnown RBP17.86■□□□□ 0.45
VPS28-208ENST00000527797 HEATR1Q9H583 2144 aaKnown RBP17.86■□□□□ 0.45
VPS28-208ENST00000527797 H7C417 338 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 ECDO95905 644 aaPredicted RBP17.85■□□□□ 0.45
VPS28-208ENST00000527797 LPLP06858 475 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 CD200P41217 278 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 RBM11P57052 281 aaKnown RBP17.85■□□□□ 0.45
VPS28-208ENST00000527797 MZT2BQ6NZ67 158 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 DCDC5Q6ZRR9 648 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 ELMOD3Q96FG2 381 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 ARHGAP5-AS1Q96IT6 56 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 COX4I2Q96KJ9 171 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 C11orf54Q9H0W9 315 aaPredicted RBP17.85■□□□□ 0.45
VPS28-208ENST00000527797 OCEL1Q9H607 264 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 MTFP1Q9UDX5 166 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 ELF5Q9UKW6 265 aaPredicted RBP17.85■□□□□ 0.45
VPS28-208ENST00000527797 RNF115Q9Y4L5 304 aa17.85■□□□□ 0.45
VPS28-208ENST00000527797 IGHV3-64DA0A0J9YX35 117 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 PRSS44E7EML9 344 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 F8VVB4 439 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 F8VWA3 439 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 GEMIN2O14893 280 aaKnown RBP17.84■□□□□ 0.45
VPS28-208ENST00000527797 LYRM1O43325 122 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 ZNF81P51508 661 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 AP3S2P59780 193 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 SSBP1Q04837 148 aaKnown RBP17.84■□□□□ 0.45
VPS28-208ENST00000527797 PNLIPRP3Q17RR3 467 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 NHLRC3Q5JS37 347 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 GDPD3Q7L5L3 318 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 Q8IYB0 196 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 ZNF488Q96MN9 340 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 PECRQ9BY49 303 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 TLNRD1Q9H1K6 362 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 NBASA2RRP1 2371 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 IGSF10Q6WRI0 2623 aa17.84■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A10PA6NDY2 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A18PA6NE21 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A16PA6NEW6 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A20PA6NIJ5 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A8PA6NJQ4 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A7PA6NKC0 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 A6NLC8 198 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A22PA8MWA6 464 aa17.83■□□□□ 0.45
VPS28-208ENST00000527797 FAM90A12PA8MX19 464 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms