RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SPNS3Q6ZMD2 512 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 SLC25A26Q70HW3 274 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 OR11L1Q8NGX0 322 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 Q8TCH9 128 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 TNFAIP8L1Q8WVP5 186 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 SLC25A46Q96AG3 418 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 ZNF488Q96MN9 340 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 GPER1Q99527 375 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 FN3KRPQ9HA64 309 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 BATF3Q9NR55 127 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 C1orf123Q9NWV4 160 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 MTCH1Q9NZJ7 389 aa12.88□□□□□ -0.35
LSM1-203ENST00000520755 hCG_1807616A0A1W2PRN6 198 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 LRRC30A6NM36 301 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 VWC2LB2RUY7 222 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 F8VVB4 439 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 F8VWA3 439 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.87□□□□□ -0.35
LSM1-203ENST00000520755 H7C1Q1 480 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 AIPO00170 330 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 IRF2P14316 349 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 PTGFRP43088 359 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 NR4A2P43354 598 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 IL24Q13007 206 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 P2RY14Q15391 338 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 ASCL4Q6XD76 172 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 BATF2Q8N1L9 274 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 OR6M1Q8NGM8 313 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 ERGIC1Q969X5 290 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 SLAMF9Q96A28 289 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 FOXRED1Q96CU9 486 aaPredicted RBP12.87□□□□□ -0.35
LSM1-203ENST00000520755 DGCR14Q96DF8 476 aaKnown RBP12.87□□□□□ -0.35
LSM1-203ENST00000520755 TIMD4Q96H15 378 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 REG4Q9BYZ8 158 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 FAM192AQ9GZU8 254 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 NARFLQ9H6Q4 476 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 NEK6Q9HC98 313 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 MRPS28Q9Y2Q9 187 aaKnown RBP12.87□□□□□ -0.35
LSM1-203ENST00000520755 MAP1AP78559 2803 aaPredicted RBP12.87□□□□□ -0.35
LSM1-203ENST00000520755 CREBBPQ92793 2442 aa12.87□□□□□ -0.35
LSM1-203ENST00000520755 A0A1W2PP11 408 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 IFNL4K9M1U5 179 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 SMAD7O15105 426 aaKnown RBP12.86□□□□□ -0.35
LSM1-203ENST00000520755 PGA5P0DJD9 388 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 HTR2CP28335 458 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 NPBWR2P48146 333 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 ERVK11-1P61568 191 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 PEG10Q86TG7 708 aaKnown RBP12.86□□□□□ -0.35
LSM1-203ENST00000520755 CIARTQ8N365 385 aaPredicted RBP12.86□□□□□ -0.35
LSM1-203ENST00000520755 GCSAMQ8N6F7 178 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 BOLLQ8N9W6 283 aaKnown RBP12.86□□□□□ -0.35
LSM1-203ENST00000520755 MAPK1IP1LQ8NDC0 245 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 PXT1Q8NFP0 134 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 LRRC29Q8WV35 223 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 HPS1Q92902 700 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 RAB1CQ92928 201 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 CPNE2Q96FN4 548 aaPredicted RBP12.86□□□□□ -0.35
LSM1-203ENST00000520755 PLGRKTQ9HBL7 147 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 STEAP1Q9UHE8 339 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 DAPK2Q9UIK4 370 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 WIPI2Q9Y4P8 454 aa12.86□□□□□ -0.35
LSM1-203ENST00000520755 ITPR3Q14573 2671 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 ISPDA4D126 451 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 SRRM5B3KS81 715 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 TMEM178BH3BS89 294 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 WNT9BO14905 357 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 AKR7A2O43488 359 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 KDM4BO94953 1096 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 ZNF205O95201 554 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 SFTPBP07988 381 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 TMEM225BP0DP42 221 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 ZNF182P17025 639 aaPredicted RBP12.85□□□□□ -0.35
LSM1-203ENST00000520755 BCL3P20749 454 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 CFHR2P36980 270 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 QRFPP83859 136 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 PLA2G7Q13093 441 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 RAB11BQ15907 218 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 ZNF181Q2M3W8 571 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 FAM201AQ5SY85 155 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 AWAT2Q6E213 333 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 GLIPR1L1Q6UWM5 242 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 SAXO1Q8IYX7 474 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 C1orf87Q8N0U7 546 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 PNLDC1Q8NA58 520 aaKnown RBP12.85□□□□□ -0.35
LSM1-203ENST00000520755 ZSCAN4Q8NAM6 433 aaPredicted RBP12.85□□□□□ -0.35
LSM1-203ENST00000520755 POC1AQ8NBT0 407 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 OR10K1Q8NGX5 313 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 OR10Z1Q8NGY1 313 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 TBC1D15Q8TC07 691 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 NRIP2Q9BQI9 281 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 DCUN1D5Q9BTE7 237 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 WDR13Q9H1Z4 485 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 LIN7BQ9HAP6 207 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 HES4Q9HCC6 221 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 SMURF1Q9HCE7 757 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 RBFOX1Q9NWB1 397 aaKnown RBP12.85□□□□□ -0.35
LSM1-203ENST00000520755 IL36GQ9NZH8 169 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 CCDC59Q9P031 241 aaKnown RBP12.85□□□□□ -0.35
LSM1-203ENST00000520755 RNF7Q9UBF6 113 aa12.85□□□□□ -0.35
LSM1-203ENST00000520755 IL36RNQ9UBH0 155 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms