RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RPUSD3Q6P087 351 aaKnown RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CBLN3Q6UW01 205 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 OR5D13Q8NGL4 314 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 C4orf45Q96LM5 186 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF385DQ9H6B1 395 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 RYDENQ9NUL5 291 aaKnown RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 SERTM2A0A1B0GWG4 89 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CHEK1O14757 476 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CD160O95971 181 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 FAM27D1Q5T7N8 215 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 OR52N4Q8NGI2 321 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 LHX4Q969G2 390 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 C2orf50Q96LR7 162 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 TMEM56Q96MV1 263 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CABLES2Q9BTV7 478 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 XKRY2A2RUG3 117 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 OR2M5A3KFT3 312 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF354AO60765 605 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 PATE4P0C8F1 98 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 PCMT1P22061 227 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 DCTDP32321 178 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 SSBP1Q04837 148 aaKnown RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 LYG2Q86SG7 212 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 OR5B3Q8NH48 314 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 CXXC4Q9H2H0 198 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 hADV38S2A0JD32 116 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 SPINT1O43278 529 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 AVPR2P30518 371 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 PRRX1P54821 245 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 GPNMBQ14956 572 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 TRAT1Q6PIZ9 186 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 TMEM123Q8N131 208 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 RFESDQ8TAC1 157 aa11.69□□□□□ -0.54
PTPRF-215ENST00000496447 AMMECR1Q9Y4X0 333 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-215ENST00000496447 AGFG2O95081 481 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 RBP4P02753 201 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 PJVKQ0ZLH3 352 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 HAGHQ16775 308 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 LINC00518Q8N0U6 118 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 PTP4A1Q93096 173 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 ZG16BQ96DA0 208 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 TVP23CQ96ET8 276 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 ARAP2Q8WZ64 1704 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 MEX3AA1L020 520 aaKnown RBP11.68□□□□□ -0.54
PTPRF-215ENST00000496447 ASPDHA6ND91 283 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 STPG1Q5TH74 334 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 UBE3DQ7Z6J8 389 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 WDR89Q96FK6 387 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-215ENST00000496447 OR6C68A6NDL8 312 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 ADAM20O43506 726 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 HRASP01112 189 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 OR5I1Q13606 314 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 PMS2CLQ68D20 193 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 OR2W3Q7Z3T1 314 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 UCK1Q9HA47 277 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 TNFRSF19Q9NS68 423 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 HMSDA8MTL9 139 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 MDH2P40926 338 aaKnown RBP11.68□□□□□ -0.54
PTPRF-215ENST00000496447 OR3A4PP47883 348 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 RNF165Q6ZSG1 346 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 GPR32P1Q8NGA4 272 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 PRO1933Q9H354 126 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 CYSLTR2Q9NS75 346 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 FER1L6Q2WGJ9 1857 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 SULT1A3P0DMM9 295 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 SULT1A4P0DMN0 295 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 RAB7AP51149 207 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 MAMSTRQ6ZN01 415 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 SPRED2Q7Z698 418 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 MRGPREQ86SM8 312 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 TUSC5Q8IXB3 177 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 C20orf196Q8IYI0 205 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 OR4C16Q8NGL9 310 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 MARVELD3Q96A59 401 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 AKR1E2Q96JD6 320 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 PSG11Q9UQ72 335 aa11.68□□□□□ -0.54
PTPRF-215ENST00000496447 KRASP01116 189 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 CEACAM3P40198 252 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 CDK5Q00535 292 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 GUCA2AQ02747 115 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 TMEM229BQ8NBD8 167 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 RNF24Q9Y225 148 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 RCL1Q9Y2P8 373 aaKnown RBP11.67□□□□□ -0.54
PTPRF-215ENST00000496447 IGFBP7Q16270 282 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 DCAF10Q5QP82 559 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 DEGS2Q6QHC5 323 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 NHLRC1Q6VVB1 395 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 NRTNQ99748 197 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 PCBP3P57721 371 aaKnown RBP11.67□□□□□ -0.54
PTPRF-215ENST00000496447 GGNBP1Q5YKI7 109 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 ZNF787Q6DD87 383 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 SIGLECL1Q8N7X8 197 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 OR6X1Q8NH79 312 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 OIT3Q8WWZ8 545 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 RHNO1Q9BSD3 238 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 FCGR3BO75015 233 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 PTGFRP43088 359 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 PKIAP61925 76 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 C11orf87Q6NUJ2 197 aa11.67□□□□□ -0.54
PTPRF-215ENST00000496447 ADGRG7Q96K78 797 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms