RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PVALBP20472 110 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-212ENST00000493341 GFERP55789 205 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 CDK5Q00535 292 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 BNIP2Q12982 314 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 IRF4Q15306 451 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 TOMM34Q15785 309 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-212ENST00000493341 NIPAL1Q6NVV3 410 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 Q6ZSR6 202 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 MDP1Q86V88 176 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 LFNGQ8NES3 379 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 OR4K2Q8NGD2 314 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 OR1J4Q8NGS1 313 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ACTL9Q8TC94 416 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 C22orf15Q8WYQ4 148 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ITFG2Q969R8 447 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 OR2M4Q96R27 311 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 NOX3Q9HBY0 568 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 DNAJC27Q9NZQ0 273 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 CBY1Q9Y3M2 126 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ZNFX1Q9P2E3 1918 aaKnown RBP3.22□□□□□ -1.89
VPS13A-212ENST00000493341 GTF3C1Q12789 2109 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 A2MP01023 1474 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 KDM5DQ9BY66 1539 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 MYO3AQ8NEV4 1616 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF705GA8MUZ8 300 aaPredicted RBP3.22□□□□□ -1.89
VPS13A-212ENST00000493341 C9J4A7 227 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 M0R1X1 148 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 FABP7O15540 132 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ATP8B1O43520 1251 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 IGLV1-47P01700 117 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 RLN2P04090 185 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 HOXA9P31269 272 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 PSMB2P49721 201 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 DSCR10P59022 87 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 CEACAM21Q3KPI0 293 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 TIMM23BQ5SRD1 257 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 SDHAF4Q5VUM1 108 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 UGT2A3Q6UWM9 527 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 PAGE2Q7Z2X7 111 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 C10orf107Q8IVU9 208 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 CYP4Z2PQ8N1L4 340 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ZNF645Q8N7E2 425 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 DYNC2LI1Q8TCX1 351 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 BLNKQ8WV28 456 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 NELFBQ8WX92 580 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 SLC35E1Q96K37 410 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 PYGO2Q9BRQ0 406 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 POTEKPQ9BYX7 375 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 SHCBP1LQ9BZQ2 653 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 WFDC1Q9HC57 220 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 RAB22AQ9UL26 194 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 ENPP4Q9Y6X5 453 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 MYOM3Q5VTT5 1437 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 MROH1Q8NDA8 1641 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 PTPN23Q9H3S7 1636 aa3.22□□□□□ -1.89
VPS13A-212ENST00000493341 KDM5AP29375 1690 aaKnown RBP3.22□□□□□ -1.89
VPS13A-212ENST00000493341 IGHV5-51A0A0C4DH38 117 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 KRBOX1C9JBD0 128 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 MPZL1O95297 269 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 POLR1AO95602 1720 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-212ENST00000493341 HLA-DMAP28067 261 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PSG7Q13046 419 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PNOCQ13519 176 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 DMC1Q14565 340 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PMVKQ15126 192 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 CEACAM16Q2WEN9 425 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 MFSD14CQ5VZR4 134 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF530Q6P9A1 599 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-212ENST00000493341 Q6ZR54 194 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF429Q86V71 674 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 DRAM1Q8N682 238 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 Q8N976 141 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 KCNS1Q96KK3 526 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PGLYRP3Q96LB9 341 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 TMEM56Q96MV1 263 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 OR4K3Q96R72 315 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 NSRP1Q9H0G5 558 aaKnown RBP3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PSG11Q9UQ72 335 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 VWDEQ8N2E2 1590 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 PRDM15P57071 1507 aaPredicted RBP3.21□□□□□ -1.9
VPS13A-212ENST00000493341 KIAA0232Q92628 1395 aa3.21□□□□□ -1.9
VPS13A-212ENST00000493341 UBDO15205 165 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 CCDC22O60826 627 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 GAS8-AS1O95177 125 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 ORM1P02763 201 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PCCAP05165 728 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 ZNF17P17021 662 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 RPS10P46783 165 aaKnown RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 RAB8AP61006 207 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 ACTBL2Q562R1 376 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 ANKRD9Q96BM1 317 aaPredicted RBP3.2□□□□□ -1.9
VPS13A-212ENST00000493341 CAMK2N2Q96S95 79 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 SPZ1Q9BXG8 430 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 DIABLOQ9NR28 239 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 CEP152O94986 1710 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 CAMSAP1Q5T5Y3 1602 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 DUOX2Q9NRD8 1548 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 ADGRL2O95490 1459 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PLA2R1Q13018 1463 aa3.2□□□□□ -1.9
VPS13A-212ENST00000493341 PTPRTO14522 1441 aa3.2□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms