RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 PMVKQ15126 192 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 MAPRE2Q15555 327 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 CLEC12AQ5QGZ9 265 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 FAM222AQ5U5X8 452 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 UGT2A3Q6UWM9 527 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF695Q8IW36 515 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 CCNYL1Q8N7R7 359 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 OR9A2Q8NGT5 310 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 SYNPRQ8TBG9 265 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 IFT81Q8WYA0 676 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 ESR2Q92731 530 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 LRRC45Q96CN5 670 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 RBMXL1Q96E39 390 aaKnown RBP3.13□□□□□ -1.91
UPF3B-203ENST00000478840 L3HYPDHQ96EM0 354 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 ANGPTL4Q9BY76 406 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 IFT46Q9NQC8 304 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 DNAJC27Q9NZQ0 273 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 SNX24Q9Y343 169 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 ENPP4Q9Y6X5 453 aa3.13□□□□□ -1.91
UPF3B-203ENST00000478840 KIAA0232Q92628 1395 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 ISPDA4D126 451 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 HLA-DQB1P01920 261 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 MRPL3P09001 348 aaKnown RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 HLA-GP17693 338 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 PSMB6P28072 239 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 UGT2B10P36537 528 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CRATP43155 626 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 TTPAP49638 278 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 BAXQ07812 192 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 PTGES3Q15185 160 aaKnown RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 SHHQ15465 462 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 TRAM1Q15629 374 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CEACAM21Q3KPI0 293 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 LINC00483Q53H64 154 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CLLU1OSQ5K130 101 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 MORN3Q6PF18 240 aaPredicted RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 SPANXA2-OT1Q8N9U9 137 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 OR2AE1Q8NHA4 323 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CCDC12Q8WUD4 166 aaPredicted RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 ORAOV1Q8WV07 137 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 FRZBQ92765 325 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CPNE4Q96A23 557 aaPredicted RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 ZMYND19Q96E35 227 aaPredicted RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 SMIM8Q96KF7 97 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 BIRC8Q96P09 236 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 QKIQ96PU8 341 aaKnown RBP eCLIP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 RNF157Q96PX1 679 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CDX2Q99626 313 aaPredicted RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 DOK1Q99704 481 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 SIRT7Q9NRC8 400 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CA10Q9NS85 328 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 RBM22Q9NW64 420 aaKnown RBP eCLIP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 C21orf62Q9NYP8 219 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 NOSIPQ9Y314 301 aaKnown RBP3.12□□□□□ -1.91
UPF3B-203ENST00000478840 CBY1Q9Y3M2 126 aa3.12□□□□□ -1.91
UPF3B-203ENST00000478840 IGHV1-3A0A0C4DH29 117 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 GOLGA8IPA6NC78 632 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 UPK2O00526 184 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 CALUO43852 315 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF324O75467 553 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 SCO1O75880 301 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 CYB5R3P00387 301 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 MUC1P15941 1255 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TAC1P20366 129 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 SYT1P21579 422 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 KDELR2P33947 212 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 GCLMP48507 274 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TUFMP49411 452 aaKnown RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 XKP51811 444 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 SLC18A1P54219 525 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 AQP5P55064 265 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 OR10A3P58181 314 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 RPL10AP62906 217 aaKnown RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF816Q0VGE8 651 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 FLOT2Q14254 428 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TRIP13Q15645 432 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TMEM249Q2WGJ8 235 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 RBM48Q5RL73 367 aaKnown RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 SSX7Q7RTT5 188 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 CYP4Z1Q86W10 505 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 ZNF101Q8IZC7 436 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 ORMDL3Q8N138 153 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 CYP4Z2PQ8N1L4 340 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 SDHCQ99643 169 aaPredicted RBP3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TBL1XR1Q9BZK7 514 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 TSGA10Q9BZW7 698 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 LHX5Q9H2C1 402 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 DIABLOQ9NR28 239 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 EURLQ9NYK6 297 aa3.11□□□□□ -1.91
UPF3B-203ENST00000478840 A0A0G2JMP0 313 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 A0A0X1KG70 313 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 A0A1B0GXF2 115 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 F8VZ95 297 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 M0QXV9 152 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 UBDO15205 165 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 CBR3O75828 277 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 RCBTB2O95199 551 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 RLN2P04090 185 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 MAS1P04201 325 aa3.1□□□□□ -1.91
UPF3B-203ENST00000478840 TAS2R43P59537 309 aa3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms