RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 TMEM100Q9NV29 134 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 TAAR3PQ9P1P4 343 aa10.25□□□□□ -0.77
PTPRF-208ENST00000437607 FBXO9Q9UK97 447 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-208ENST00000437607 IFITM5A6NNB3 132 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 FAM157AC9JC47 383 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 M0R233 179 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 SLC17A2O00624 439 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 WNT9BO14905 357 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 TMEM127O75204 238 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 ALDOBP05062 364 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 HTR2CP28335 458 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 POU3F4P49335 361 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 RBP2P50120 134 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 GPM6AP51674 278 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 CAPZA1P52907 286 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 GNG3P63215 75 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 CEACAM21Q3KPI0 293 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 ALKBH6Q3KRA9 238 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF404Q494X3 552 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 TMEM255AQ5JRV8 349 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 AWAT2Q6E213 333 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 MZT2AQ6P582 158 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 KRT74Q7RTS7 529 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 LRP11Q86VZ4 500 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 NR2C2APQ86WQ0 139 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 CDH26Q8IXH8 852 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 SPERTQ8NA61 448 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 OR13G1Q8NGZ3 307 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 RFT1Q96AA3 541 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 ITPKCQ96DU7 683 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 SPACA5Q96QH8 159 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 GFI1Q99684 422 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 SLC30A2Q9BRI3 323 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 MRI1Q9BV20 369 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 BARHL1Q9BZE3 327 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 SLIRPQ9GZT3 109 aaKnown RBP10.24□□□□□ -0.77
PTPRF-208ENST00000437607 MYEF2Q9P2K5 600 aaKnown RBP10.24□□□□□ -0.77
PTPRF-208ENST00000437607 STEAP1Q9UHE8 339 aa10.24□□□□□ -0.77
PTPRF-208ENST00000437607 TGP01266 2768 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 PQLC2LA1A4F0 135 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 ZSCAN5BA6NJL1 495 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 TMEM210A6NLX4 147 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 HPXP02790 462 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 TNFSF4P23510 183 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 COL8A2P25067 703 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 EVX1P49640 407 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF81P51508 661 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 MTCP1P56278 107 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 KISS1Q15726 138 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 DMRTC1Q5HYR2 192 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 C12orf54Q6X4T0 127 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 OR5A2Q8NGI9 324 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 OR5D18Q8NGL1 313 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 CLDND2Q8NHS1 167 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 LGALS14Q8TCE9 139 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 TNFAIP8L1Q8WVP5 186 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 ACOT12Q8WYK0 555 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 OR5P3Q8WZ94 311 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 ELMOD3Q96FG2 381 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 RNF170Q96K19 258 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 S100A13Q99584 98 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 NKX3-1Q99801 234 aaPredicted RBP10.23□□□□□ -0.77
PTPRF-208ENST00000437607 MSL2Q9HCI7 577 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 C14orf119Q9NWQ9 140 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 METRNQ9UJH8 293 aa10.23□□□□□ -0.77
PTPRF-208ENST00000437607 MRPS28Q9Y2Q9 187 aaKnown RBP10.23□□□□□ -0.77
PTPRF-208ENST00000437607 B4DSR2 109 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF732B4DXR9 585 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 RGS5O15539 181 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 MLNRO43193 412 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 CLPXO76031 633 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 CYB5AP00167 134 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 PLATP00750 562 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 SLC2A2P11168 524 aaPredicted RBP10.22□□□□□ -0.77
PTPRF-208ENST00000437607 S100A5P33763 92 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ALDH3B1P43353 468 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 OR3A4PP47883 348 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 MMP15P51511 669 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 DYNC1I2Q13409 638 aaKnown RBP10.22□□□□□ -0.77
PTPRF-208ENST00000437607 P2RY14Q15391 338 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ZNF573Q86YE8 665 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 OR2Z1Q8NG97 314 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 GTF3AQ92664 365 aaKnown RBP10.22□□□□□ -0.77
PTPRF-208ENST00000437607 YIPF5Q969M3 257 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 DIRC2Q96SL1 478 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 OCEL1Q9H607 264 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 NARFLQ9H6Q4 476 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 PPP1R3EQ9H7J1 279 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 CNTD2Q9H8S5 307 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 LIN7BQ9HAP6 207 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ABRACLQ9P1F3 81 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ADAM30Q9UKF2 790 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 ETV7Q9Y603 341 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 A3GALT2U3KPV4 340 aa10.22□□□□□ -0.77
PTPRF-208ENST00000437607 A0A075B6Q4 140 aa10.21□□□□□ -0.77
PTPRF-208ENST00000437607 A0A0B4J203 849 aa10.21□□□□□ -0.77
PTPRF-208ENST00000437607 A6NLC8 198 aa10.21□□□□□ -0.77
PTPRF-208ENST00000437607 F5H5P2 479 aa10.21□□□□□ -0.77
PTPRF-208ENST00000437607 J3QT63 122 aa10.21□□□□□ -0.77
PTPRF-208ENST00000437607 SPRY3O43610 288 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms