RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ZNF429Q86V71 674 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 OR4D9Q8NGE8 314 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 OR5D13Q8NGL4 314 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 RAB5AP20339 215 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 FPR2P25090 351 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 PTGFRP43088 359 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 SLC6A13Q9NSD5 602 aa13.71□□□□□ -0.22
PTPRF-206ENST00000429895 NEURL1O76050 574 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 ANKRD34CP0C6C1 535 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 CCDC190Q86UF4 302 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 LILRB1Q8NHL6 650 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-206ENST00000429895 CXorf58Q96LI9 332 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 RGPD1P0DJD0 1748 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 TGIF2LYQ8IUE0 185 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 ZNF683Q8IZ20 524 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 ZBTB44Q8NCP5 570 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 C10orf90Q96M02 699 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 SSC5DA1L4H1 1573 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 C3orf85A0A1B0GTC6 90 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 BMPR1BO00238 502 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 TNFSF14O43557 240 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 LY86O95711 162 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 SBK3P0C264 359 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 PECRQ9BY49 303 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 PCED1AQ9H1Q7 454 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 TOGARAM1Q9Y4F4 1720 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 TOPAZ1Q8N9V7 1692 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 A0A1W2PNV4 684 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 CEACAM3P40198 252 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 OR8B3Q8NGG8 313 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 OR8B2Q96RD0 313 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 RHOFQ9HBH0 211 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 LHX9Q9NQ69 397 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 A0A1W2PN81 502 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 SPNP16150 400 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 CHRNA7P36544 502 aa13.7□□□□□ -0.22
PTPRF-206ENST00000429895 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.7□□□□□ -0.22
PTPRF-206ENST00000429895 SFTA3P0C7M3 94 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 LGALS7P47929 136 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 TOMM34Q15785 309 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-206ENST00000429895 MIDNQ504T8 468 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 CDX2Q99626 313 aaPredicted RBP13.69□□□□□ -0.22
PTPRF-206ENST00000429895 PCOLCE2Q9UKZ9 415 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 NKX2-2O95096 273 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 SP1P08047 785 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 APELAP0DMC3 54 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 MAGEA5P43359 124 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 NHLH1Q02575 133 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 NHLH2Q02577 135 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 LINC01555Q8NAE3 123 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 SIGLEC7Q9Y286 467 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 HIST1H1DP16402 221 aaKnown RBP13.69□□□□□ -0.22
PTPRF-206ENST00000429895 RND1Q92730 232 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 CACNG5Q9UF02 275 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 DNPH1O43598 174 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 GNG4P50150 75 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 NXPH1P58417 271 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 CLEC9AQ6UXN8 241 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 DUSP21Q9H596 190 aa13.69□□□□□ -0.22
PTPRF-206ENST00000429895 SLX4Q8IY92 1834 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 IGHA1P01876 353 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 IGHA2P01877 340 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 MMP15P51511 669 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 OR52L2PQ8NGH6 319 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 SMIM4Q8WVI0 70 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 CDK2AP1O14519 115 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 OR5AL1P0C617 328 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 MDH2P40926 338 aaKnown RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 KIR2DS2P43631 304 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 FOXO1Q12778 655 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 C11orf87Q6NUJ2 197 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 MOB1BQ7L9L4 216 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 WFDC3Q8IUB2 231 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 GPR137Q96N19 417 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 NAT8BQ9UHF3 227 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 PRRC2BQ5JSZ5 2229 aaKnown RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 AHDC1Q5TGY3 1603 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 TIAL1Q01085 375 aaKnown RBP eCLIP13.68□□□□□ -0.223e-6■■■□□ 14.6
PTPRF-206ENST00000429895 GPBAR1Q8TDU6 330 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 PTPMT1Q8WUK0 201 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 FGF8P55075 233 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 GTF2H5Q6ZYL4 71 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 OR4A4PQ8NGN8 299 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 ZNF596Q8TC21 504 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 FKBP11Q9NYL4 201 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 THYN1Q9P016 225 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 HTR1DP28221 377 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 HNRNPA3P51991 378 aaKnown RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 RPS4XP62701 263 aaKnown RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 TMEM97Q5BJF2 176 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 ETV3LQ6ZN32 361 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 NEIL1Q96FI4 390 aaPredicted RBP13.68□□□□□ -0.22
PTPRF-206ENST00000429895 RASL11BQ9BPW5 248 aa13.68□□□□□ -0.22
PTPRF-206ENST00000429895 GALR1P47211 349 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 OR5C1Q8NGR4 320 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 PRRX2Q99811 253 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 PARD6AQ9NPB6 346 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 PCDHGA9Q9Y5G4 932 aaKnown RBP13.67□□□□□ -0.22
PTPRF-206ENST00000429895 SPAARA0A1B0GVQ0 90 aa13.67□□□□□ -0.22
PTPRF-206ENST00000429895 FAM24AA6NFZ4 105 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms