RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NHLRC1Q6VVB1 395 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 ERI1Q8IV48 349 aaKnown RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 ERMAPQ96PL5 475 aaPredicted RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 TSPAN32Q96QS1 320 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 MBOAT4Q96T53 435 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 TUBG2Q9NRH3 451 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 EXTL2Q9UBQ6 330 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 SIGLEC7Q9Y286 467 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 SAMHD1Q9Y3Z3 626 aaKnown RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 FLNAP21333 2647 aaKnown RBP5.32□□□□□ -1.56
USP40-202ENST00000409945 PLCE1Q9P212 2302 aa5.32□□□□□ -1.56
USP40-202ENST00000409945 A4D1N5 150 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SYNGR3O43761 229 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SLC16A7O60669 478 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 NOL3O60936 208 aaKnown RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 IFNGP01579 166 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CD8AP01732 235 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 IGHV4-39P01824 125 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CRHBPP24387 322 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 EEF1B2P24534 225 aaKnown RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 STOMP27105 288 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 LAP3P28838 519 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CALCRP30988 508 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 NKX2-1P43699 371 aaPredicted RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 OMPP47874 163 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 KLF3P57682 345 aaPredicted RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 GLO1Q04760 184 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CBX3Q13185 183 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 ZNF718Q3SXZ3 478 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 PABPC1L2AQ5JQF8 200 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 KDM4DQ6B0I6 523 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 C11orf71Q6IPW1 123 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SLC25A47Q6Q0C1 308 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 B3GLCTQ6Y288 498 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 COMMD2Q86X83 199 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 ZNF519Q8TB69 540 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 Q96M85 177 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 GPX7Q96SL4 187 aaPredicted RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 TXN2Q99757 166 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 APOL4Q9BPW4 351 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 REG4Q9BYZ8 158 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 OR52D1Q9H346 318 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 BAIAP2Q9UQB8 552 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 IER3IP1Q9Y5U9 82 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 U3KQV3 271 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 PRR14LQ5THK1 2151 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 USF3Q68DE3 2245 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 LOC390937A0A1W2PQ73 354 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 H3BSA7 217 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CDC42EP2O14613 210 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 MAGEB3O15480 346 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CSN3P07498 182 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 COX5BP10606 129 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 ZNF35P13682 527 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 ZNF823P16415 610 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 ZNF32P17041 273 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 BLVRAP53004 296 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 UCP2P55851 309 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CXCR4P61073 352 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 LSM6P62312 80 aaKnown RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 CX3CL1P78423 397 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 FMODQ06828 376 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 TNK1Q13470 666 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 AQP6Q13520 282 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 C2orf76Q3KRA6 126 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 IQCCQ4KMZ1 466 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 PRR27Q6MZM9 219 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 C1orf94Q6P1W5 598 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 FAHD1Q6P587 224 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 LEG1Q6P5S2 330 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 TMEM179BQ7Z7N9 219 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 MEX3DQ86XN8 651 aaKnown RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 HS3ST5Q8IZT8 346 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SLC7A5P1Q8MH63 180 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 THAP8Q8NA92 274 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 OR5L1Q8NGL2 311 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SYNPRQ8TBG9 265 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 CORO2AQ92828 525 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 MRPL24Q96A35 216 aaKnown RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 DOK1Q99704 481 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SPXQ9BT56 116 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 SYT4Q9H2B2 425 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 POLE4Q9NR33 117 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 PLEK2Q9NYT0 353 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 PDP1Q9P0J1 537 aaPredicted RBP5.31□□□□□ -1.56
USP40-202ENST00000409945 ENOPH1Q9UHY7 261 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 KLHL21Q9UJP4 597 aa5.31□□□□□ -1.56
USP40-202ENST00000409945 TEP1Q99973 2627 aaKnown RBP5.3□□□□□ -1.56
USP40-202ENST00000409945 ALPK2Q86TB3 2170 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 C5orf49A4QMS7 147 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 RIIAD1A6NNX1 92 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 H7C1C5 153 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 CCL24O00175 119 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 ARPC3O15145 178 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 SGCEO43556 437 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 MRPS14O60783 128 aaKnown RBP5.3□□□□□ -1.56
USP40-202ENST00000409945 TXNDC12O95881 172 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 ADRA2AP08913 450 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 PATE4P0C8F1 98 aa5.3□□□□□ -1.56
USP40-202ENST00000409945 ANXA8P13928 327 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms