RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LINC00615Q96LM1 132 aaPredicted RBP6.42□□□□□ -1.38
UPF2-203ENST00000397053 FSCN3Q9NQT6 498 aa6.42□□□□□ -1.38
UPF2-203ENST00000397053 RNF7Q9UBF6 113 aa6.42□□□□□ -1.38
UPF2-203ENST00000397053 SF3B6Q9Y3B4 125 aaKnown RBP6.42□□□□□ -1.38
UPF2-203ENST00000397053 FAM24AA6NFZ4 105 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 ACTL6AO96019 429 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RPS19P39019 145 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 THSD4Q6ZMP0 1018 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 MOGAT3Q86VF5 341 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 BAP18Q8IXM2 172 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 OR2D2Q9H210 308 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 NTMQ9P121 344 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 TRAPPC4Q9Y296 219 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 MYH2Q9UKX2 1941 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 EPPINO95925 133 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PATE4P0C8F1 98 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PF4V1P10720 104 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 CCKARP32238 428 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 LIPAP38571 399 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 TFPI2P48307 235 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SULT1A1P50225 295 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 UBE2MP61081 183 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 LYRM7Q5U5X0 104 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 CARFQ8N187 725 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 ARRDC1Q8N5I2 433 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 ZNF707Q96C28 371 aaPredicted RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 MPC1Q9Y5U8 109 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PHRF1Q9P1Y6 1649 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 A0A0B4J293 547 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PF4P02776 101 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 CTSLP07711 333 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SP1P08047 785 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PMCHP20382 165 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PTBP1P26599 531 aaKnown RBP eCLIP6.41□□□□□ -1.382e-9■■■■■ 35.2
UPF2-203ENST00000397053 MDH2P40926 338 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 RAC3P60763 192 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 HTRA4P83105 476 aaPredicted RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 SP6Q3SY56 376 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 FDX2Q6P4F2 183 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 VWA1Q6PCB0 445 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 C20orf196Q8IYI0 205 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SLC7A5P1Q8MH63 180 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 NT5CQ8TCD5 201 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SLC35B4Q969S0 331 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SMIM12Q96EX1 92 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RNF2Q99496 336 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 GSX2Q9BZM3 304 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 SLC25A32Q9H2D1 315 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 PLEKHB1Q9UF11 243 aaPredicted RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 NAT8BQ9UHF3 227 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 FOXJ3Q9UPW0 622 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RCL1Q9Y2P8 373 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 YBX2Q9Y2T7 364 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 XRN1Q8IZH2 1706 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 IGHV3OR16-12A0A075B7B8 117 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 C7orf72A4D263 438 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 MELTFP08582 738 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 HERVK_113P61574 105 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 BTG1P62324 171 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 COL19A1Q14993 1142 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 KISS1Q15726 138 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 ZNF528Q3MIS6 628 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 C19orf54Q5BKX5 351 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 FFAR4Q5NUL3 377 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RHBDD2Q6NTF9 364 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RNASEKQ6P5S7 137 aaKnown RBP6.41□□□□□ -1.38
UPF2-203ENST00000397053 OR1B1Q8NGR6 318 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 RASL12Q9NYN1 266 aa6.41□□□□□ -1.38
UPF2-203ENST00000397053 CIDEAO60543 219 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 SPINK4O60575 86 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ACP1P24666 158 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 KIR3DL2P43630 455 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 TMPRSS3P57727 454 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 UBE2L3P68036 154 aaKnown RBP6.4□□□□□ -1.38
UPF2-203ENST00000397053 FMODQ06828 376 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 AMMECR1LQ6DCA0 310 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ASCL5Q7RTU5 278 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 FUNDC1Q8IVP5 155 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ZNF547Q8IVP9 402 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 TEX37Q96LM6 180 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 LRP12Q9Y561 859 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 OR2A25A4D2G3 310 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 TRIM77I1YAP6 450 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 DHRS3O75911 302 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 MGPP08493 103 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 OR4E1P0C645 316 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 LIMK1P53667 647 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 SLC37A1P57057 533 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 ZNF117Q03924 483 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 SLC38A11Q08AI6 406 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 FHL5Q5TD97 284 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 EBLN2Q6P2I7 272 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 TMEM92Q6UXU6 159 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 C16orf47Q6ZP98 133 aaPredicted RBP6.4□□□□□ -1.38
UPF2-203ENST00000397053 ZNF485Q8NCK3 441 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 DUSP18Q8NEJ0 188 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 OTOSQ8NHW6 89 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 NUDT8Q8WV74 236 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 C4orf45Q96LM5 186 aa6.4□□□□□ -1.38
UPF2-203ENST00000397053 GHITMQ9H3K2 345 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms