RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 FAM219AQ8IW50 185 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 TERB2Q8NHR7 220 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 FNDC9Q8TBE3 224 aa12.12□□□□□ -0.47
SNCA-204ENST00000394989 ELL3Q9HB65 397 aaPredicted RBP12.12□□□□□ -0.47
SNCA-204ENST00000394989 hCG_38984A0A1B0GV85 526 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 RFPL4AA6NLU0 287 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 ZNF587BE7ETH6 402 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 RFPL4AL1F8VTS6 287 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 AKR1C4P17516 323 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 MEOX2P50222 304 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 RAB13P51153 203 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 FAM3AP98173 230 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 C6orf201Q7Z4U5 140 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 HSD17B13Q7Z5P4 300 aaPredicted RBP12.11□□□□□ -0.47
SNCA-204ENST00000394989 Q96M66 194 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 PDCD10Q9BUL8 212 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 ST6GALNAC5Q9BVH7 336 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 C5orf66Q9H5L9 145 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 PURGQ9UJV8 347 aaKnown RBP12.11□□□□□ -0.47
SNCA-204ENST00000394989 FAM230AA0A1W2PPH8 454 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 CEACAM18A8MTB9 384 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 NFYBP25208 207 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 AKR1C3P42330 323 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 SPEM2Q0P670 501 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 PABPC1L2AQ5JQF8 200 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 C9orf135Q5VTT2 229 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 FAHD2BQ6P2I3 314 aaPredicted RBP12.11□□□□□ -0.47
SNCA-204ENST00000394989 LDLRAD3Q86YD5 345 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 OR1S2Q8NGQ3 325 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 SPSB1Q96BD6 273 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 FAHD2AQ96GK7 314 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 S100A13Q99584 98 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 ABI3Q9P2A4 366 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 MCTS1Q9ULC4 181 aaKnown RBP12.11□□□□□ -0.47
SNCA-204ENST00000394989 DNAJC13O75165 2243 aa12.11□□□□□ -0.47
SNCA-204ENST00000394989 ZNF503-AS2A6NEH8 195 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 ZNHIT1O43257 154 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 PCBD1P61457 104 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 C3AR1Q16581 482 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 ARRDC1Q8N5I2 433 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 MDS2Q8NDY4 140 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 THAP6Q8TBB0 222 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 TMEM230Q96A57 120 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 CACNA1HO95180 2353 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 IGKV1D-8A0A087WSZ0 117 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 ZNF705EA8MWA4 302 aaPredicted RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 FARS2O95363 451 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 TMEM225BP0DP42 221 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 HLA-GP17693 338 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 CPT2P23786 658 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 GABRR1P24046 479 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 NPY4RP50391 375 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 BLOC1S1P78537 153 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 PAN3Q58A45 887 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 AADACL3Q5VUY0 350 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 LHFPL1Q86WI0 220 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 OR13G1Q8NGZ3 307 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 LINC00470Q9BZP3 86 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 CALHM2Q9HA72 323 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 GPR132Q9UNW8 380 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 OR5H14A6NHG9 310 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 FIGNL2A6NMB9 653 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 SDCBPO00560 298 aaPredicted RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 NME2P1O60361 137 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 NDUFS6O75380 124 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 SP1P08047 785 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 NME2P22392 152 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 VAMP1P23763 118 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 SNU13P55769 128 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 SNRPEP62304 92 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 ARF1P84077 181 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 SRSF3P84103 164 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 RBM39Q14498 530 aaKnown RBP12.1□□□□□ -0.47
SNCA-204ENST00000394989 TGIF1Q15583 401 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 NRN1LQ496H8 165 aa12.1□□□□□ -0.47
SNCA-204ENST00000394989 A0A096LPE4 126 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 IGKV1-12A0A0C4DH73 117 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 A0A1W2PPZ6 126 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 SERPINE3A8MV23 424 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 IGKV1D-12P01611 117 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 RPA2P15927 270 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 AMY2BP19961 511 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 OR8B8Q15620 311 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 ACTBL2Q562R1 376 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 LPCAT3Q6P1A2 487 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 IL22RA1Q8N6P7 574 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 CASTOR1Q8WTX7 329 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 HDHD3Q9BSH5 251 aaPredicted RBP12.09□□□□□ -0.47
SNCA-204ENST00000394989 C1QTNF5Q9BXJ0 243 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 TREM1Q9NP99 234 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 NIT2Q9NQR4 276 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 LIPGQ9Y5X9 500 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 TUBAL3A6NHL2 446 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 DBX1A6NMT0 343 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 SNAPC5O75971 98 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 DUS4LO95620 317 aaKnown RBP12.09□□□□□ -0.47
SNCA-204ENST00000394989 NRASP01111 189 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 PI3P19957 117 aa12.09□□□□□ -0.47
SNCA-204ENST00000394989 HOXA1P49639 335 aaPredicted RBP12.09□□□□□ -0.47
SNCA-204ENST00000394989 MEOX1P50221 254 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms