RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NAAAQ02083 359 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF260Q3ZCT1 412 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 PABPC1L2AQ5JQF8 200 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 LAMTOR1Q6IAA8 161 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 GLIPR1L1Q6UWM5 242 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 OR2W3Q7Z3T1 314 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 RNF144BQ7Z419 303 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF101Q8IZC7 436 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 SLC30A7Q8NEW0 376 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 SPACA5Q96QH8 159 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 GON7Q9BXV9 100 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF436Q9C0F3 470 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 PTTG3PQ9NZH4 202 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ZNF69Q9UC07 566 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 ELF5Q9UKW6 265 aaPredicted RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 MRPS28Q9Y2Q9 187 aaKnown RBP8.76□□□□□ -1.01
VPS53-202ENST00000389040 HSPB11Q9Y547 144 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 V9GYS6 101 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 FREM1Q5H8C1 2179 aa8.76□□□□□ -1.01
VPS53-202ENST00000389040 IGKV1-9A0A0C4DH69 117 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 A0A1W2PR80 420 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 ZNF503-AS2A6NEH8 195 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 SIAH2O43255 324 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 SYNGR3O43761 229 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 OR3A4PP47883 348 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 IDH3GP51553 393 aaPredicted RBP8.75□□□□□ -1.01
VPS53-202ENST00000389040 RPS23P62266 143 aaKnown RBP8.75□□□□□ -1.01
VPS53-202ENST00000389040 ZNF626Q68DY1 528 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 C20orf204Q6ZNR8 217 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 ZNF584Q8IVC4 421 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 SLC7A5P1Q8MH63 180 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 C9orf62Q8N4C0 152 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 CHST4Q8NCG5 386 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 CCDC54Q8NEL0 328 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 OR52H1Q8NGJ2 320 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 CMBLQ96DG6 245 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 OR10A2Q9H208 303 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 EIF3KQ9UBQ5 218 aaKnown RBP8.75□□□□□ -1.01
VPS53-202ENST00000389040 SCP2D1Q9UJQ7 156 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 DOPEY2Q9Y3R5 2298 aa8.75□□□□□ -1.01
VPS53-202ENST00000389040 ZNF736B4DX44 427 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 MTRF1O75570 445 aaKnown RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 RAB3DO95716 219 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CD74P04233 296 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 RLN1P04808 185 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 MELTFP08582 738 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 UBBP0CG47 229 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SNRPD2P62316 118 aaKnown RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF672Q499Z4 452 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 CDNFQ49AH0 187 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF787Q6DD87 383 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ALKBH2Q6NS38 261 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF774Q6NX45 483 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SLC22A25Q6T423 547 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 DRAM2Q6UX65 266 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 Q6ZSR3 168 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 TRAPPC6BQ86SZ2 158 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 TMEM200AQ86VY9 491 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SPICQ8N5J4 248 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF611Q8N823 705 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CPEB3Q8NE35 698 aaKnown RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 OR10R2Q8NGX6 335 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 OR1F12Q8NHA8 337 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 KCNG3Q8TAE7 436 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 FGFBP3Q8TAT2 258 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PP6455Q8WZ26 134 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 C10orf35Q96D05 121 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 POM121L2Q96KW2 1035 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 C1orf147Q96MC9 270 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 GPER1Q99527 375 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 C1QTNF6Q9BXI9 259 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 BCL2L14Q9BZR8 327 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CHST5Q9GZS9 411 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 WNT5BQ9H1J7 359 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF442Q9H7R0 627 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PLEKHF2Q9H8W4 249 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 DLL4Q9NR61 685 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 MGAT4AQ9UM21 535 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PIGLQ9Y2B2 252 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 BAHCC1Q9P281 2608 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ASH1LQ9NR48 2969 aaKnown RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 IGHV2OR16-5A0A0B4J2B6 119 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SHISA9B4DS77 424 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 M0QYG6 137 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 HS3ST1O14792 307 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 AKR7A2O43488 359 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CDC14BO60729 498 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 ZNF780AO75290 641 aaPredicted RBP8.74□□□□□ -1.01
VPS53-202ENST00000389040 ALX3O95076 343 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 AMY2AP04746 511 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 CHRM2P08172 466 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 VSIG10L2P0DP72 767 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PRF1P14222 555 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 GNB3P16520 340 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 FAHP16930 419 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SNAI3Q3KNW1 292 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 IDO2Q6ZQW0 420 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 NLRC3Q7RTR2 1065 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 SLC36A1Q7Z2H8 476 aa8.74□□□□□ -1.01
VPS53-202ENST00000389040 PNLDC1Q8NA58 520 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms