RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 MFNGO00587 321 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 AGFG1P52594 562 aaKnown RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 BSXQ3C1V8 233 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 FFAR4Q5NUL3 377 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 ALKBH3Q96Q83 286 aaPredicted RBP17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 TRAV8-7A0A075B6U6 113 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 FCN1O00602 326 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 MYOGP15173 224 aa17.41■□□□□ 0.38
CCDC88B-202ENST00000356786 C3orf85A0A1B0GTC6 90 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 TTRP02766 147 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 CLDN15P56746 228 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 DUSP2Q05923 314 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 CBLN3Q6UW01 205 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 TECTBQ96PL2 329 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SBF2Q86WG5 1849 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ABCD4O14678 606 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 GALR2O43603 387 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SLC38A11Q08AI6 406 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 Q3ZCU0 254 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM209BQ5JX69 171 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SCCPDHQ8NBX0 429 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNRF4Q8WWF5 429 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 NRXN2Q9P2S2 1712 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SHISA8B8ZZ34 492 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 MPZL1O95297 269 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 NDUFB7P17568 137 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM109BQ6ICB4 259 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 PUSL1Q8N0Z8 303 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 OR2T10Q8NGZ9 312 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ATOH1Q92858 354 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 NOL4LQ96MY1 436 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SERTM2A0A1B0GWG4 89 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 OR4C45A6NMZ5 311 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 TMIGD3P0DMS9 266 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 RAC1P63000 192 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 PRICKLE4Q2TBC4 344 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 FAM78BQ5VT40 261 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF770Q6IQ21 691 aaPredicted RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 OR10AC1Q8NH08 325 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 CHRDL1Q9BU40 450 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 SLC25A22Q9H936 323 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF355PQ9NSJ1 428 aa17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 MRPS18AQ9NVS2 196 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 LSM2Q9Y333 95 aaKnown RBP17.4■□□□□ 0.38
CCDC88B-202ENST00000356786 ZNF25P17030 456 aaPredicted RBP17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 CCDC74BQ96LY2 380 aa17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 TAAR9Q96RI9 348 aa17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 COMMD5Q9GZQ3 224 aa17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 ERRFI1Q9UJM3 462 aaPredicted RBP17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 SIRT4Q9Y6E7 314 aaPredicted RBP17.39■□□□□ 0.38
CCDC88B-202ENST00000356786 NAT2P11245 290 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF547Q8IVP9 402 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 TNFSF18Q9UNG2 199 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 CD160O95971 181 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 CCKARP32238 428 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 SUMO3P55854 103 aaPredicted RBP17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 DLK1P80370 383 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 MYBPHQ13203 477 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 FAM219AQ8IW50 185 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 NPEPL1Q8NDH3 523 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 DUXBA0A1W2PPF3 345 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 AMTP48728 403 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 OR10G3Q8NGC4 313 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 S1PR3Q99500 378 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 YTHDF2Q9Y5A9 579 aaKnown RBP17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 KIAA1217Q5T5P2 1943 aa17.39■□□□□ 0.37
CCDC88B-202ENST00000356786 PIAS2O75928 621 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 CEACAM16Q2WEN9 425 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 TSPO2Q5TGU0 170 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 MBD1Q9UIS9 605 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 CXorf51AA0A1B0GTR3 108 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 NPIPB8E9PQR5 432 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 CNN1P51911 297 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 RPS4XP62701 263 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 DCAF12L2Q5VW00 463 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 CEP290O15078 2479 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 DHRS3O75911 302 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 ANKRD34CP0C6C1 535 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 RGP1Q92546 391 aaPredicted RBP17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 OR2A5Q96R48 311 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 NRIP2Q9BQI9 281 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 Q9N2K0 584 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 CACNG5Q9UF02 275 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 TERTO14746 1132 aaKnown RBP17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 ARL16Q0P5N6 197 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF345Q14585 488 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 VN1R4Q7Z5H5 301 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 OR10A7Q8NGE5 316 aa17.38■□□□□ 0.37
CCDC88B-202ENST00000356786 WISP3O95389 354 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 EDARADDQ8WWZ3 215 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 CLDN23Q96B33 292 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 GALMQ96C23 342 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 MRGPRX1Q96LB2 322 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 FLRT3Q9NZU0 649 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 ZNF835Q9Y2P0 537 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 PLRG1O43660 514 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 CNIH1O95406 144 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 CTSDP07339 412 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 ARR3P36575 388 aa17.37■□□□□ 0.37
CCDC88B-202ENST00000356786 GPM6AP51674 278 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms