RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 ERVH48-1M5A8F1 160 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 SSX5O60225 188 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 KITLGP21583 273 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 BLVRBP30043 206 aaPredicted RBP13.22□□□□□ -0.29
LIMS1-202ENST00000338045 FAUP35544 74 aaKnown RBP13.22□□□□□ -0.29
LIMS1-202ENST00000338045 LY6DQ14210 128 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 ARL6IP1Q15041 203 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 FAM76BQ5HYJ3 339 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 PCSK4Q6UW60 755 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 C22orf34Q6ZV56 151 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF573Q86YE8 665 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 OSR2Q8N2R0 312 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 NUDCD2Q8WVJ2 157 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 ST8SIA4Q92187 359 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 PURGQ9UJV8 347 aaKnown RBP13.22□□□□□ -0.29
LIMS1-202ENST00000338045 ANAPC10Q9UM13 185 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 NUBP2Q9Y5Y2 271 aa13.22□□□□□ -0.29
LIMS1-202ENST00000338045 M0R1B8 84 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 RCVRNP35243 200 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 CCR6P51684 374 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 TAS2R19P59542 299 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 BTG1P62324 171 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 ZNF718Q3SXZ3 478 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 AGAP6Q5VW22 663 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 ELP2Q6IA86 826 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 SSX8Q7RTT4 187 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 TRAPPC6BQ86SZ2 158 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 SLC51BQ86UW2 128 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 OR4C16Q8NGL9 310 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 OR51I2Q9H344 312 aa13.21□□□□□ -0.29
LIMS1-202ENST00000338045 SERPINE3A8MV23 424 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 INMT-MINDY4F8WBC2 141 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 CA11O75493 328 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 CD74P04233 296 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 CD3DP04234 171 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 S100A6P06703 90 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 AKAIN1P0CW23 69 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 CTRB1P17538 263 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 MPZP25189 248 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 C6orf183Q5T699 404 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 RSBN1Q5VWQ0 802 aaPredicted RBP13.21□□□□□ -0.3
LIMS1-202ENST00000338045 CTRB2Q6GPI1 263 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 STEAP1BQ6NZ63 245 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 BTN2A1Q7KYR7 527 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 MKXQ8IYA7 352 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 OR8G5Q8NG78 346 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 RTL8AQ9BWD3 113 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 PECRQ9BY49 303 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 PKIBQ9C010 78 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 NUDT15Q9NV35 164 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 HSF4Q9ULV5 492 aa13.21□□□□□ -0.3
LIMS1-202ENST00000338045 ATRXP46100 2492 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 A0A1B0GWJ7 208 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 CYB5AP00167 134 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 CRYAAP02489 173 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 NPBWR2P48146 333 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 RAG2P55895 527 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 GNG2P59768 71 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 NKX6-1P78426 367 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-202ENST00000338045 DAZAP2Q15038 168 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-202ENST00000338045 TAF9Q16594 264 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 TATDN3Q17R31 274 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 NHLRC3Q5JS37 347 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 SFRP4Q6FHJ7 346 aaPredicted RBP13.2□□□□□ -0.3
LIMS1-202ENST00000338045 FAAP20Q6NZ36 180 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 FBXL14Q8N1E6 418 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 OR4D10Q8NGI6 311 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 MICU1Q9BPX6 476 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 MTCH1Q9NZJ7 389 aa13.2□□□□□ -0.3
LIMS1-202ENST00000338045 ANKRD34BA5PLL1 514 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 GABRR1P24046 479 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 RBM11P57052 281 aaKnown RBP13.19□□□□□ -0.3
LIMS1-202ENST00000338045 IL24Q13007 206 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 PIGYQ3MUY2 71 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 HAGHLQ6PII5 290 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-202ENST00000338045 WDR86Q86TI4 376 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 OR8S1Q8NH09 359 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 CYYR1Q96J86 154 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 OCSTAMPQ9BR26 566 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 ADAT1Q9BUB4 502 aaKnown RBP13.19□□□□□ -0.3
LIMS1-202ENST00000338045 MCUBQ9NWR8 336 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 ST3GAL6Q9Y274 331 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 SPEF1Q9Y4P9 236 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 LRP5LA4QPB2 252 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 J3QT63 122 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 GEMIN2O14893 280 aaKnown RBP13.19□□□□□ -0.3
LIMS1-202ENST00000338045 SYNGR1O43759 233 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 CHATP28329 748 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 GCH1P30793 250 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 GLRXP35754 106 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 FGF12P61328 243 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 RGS7BPQ6MZT1 257 aaPredicted RBP13.19□□□□□ -0.3
LIMS1-202ENST00000338045 GVQW1Q8N7I0 195 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 SLAMF9Q96A28 289 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 TMEM100Q9NV29 134 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 OSGIN2Q9Y236 505 aa13.19□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A10PA6NDY2 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A18PA6NE21 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A16PA6NEW6 464 aa13.18□□□□□ -0.3
LIMS1-202ENST00000338045 FAM90A20PA6NIJ5 464 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms