RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SYT3Q9BQG1 590 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PCED1AQ9H1Q7 454 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 NIT2Q9NQR4 276 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 UBE2J1Q9Y385 318 aaPredicted RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 KPTNQ9Y664 436 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 DHRS7CA6NNS2 312 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 DHRS3O75911 302 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PTGER4P35408 488 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 VAMP2P63027 116 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 TGIF1Q15583 401 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 EIF2S3LQ2VIR3 472 aaKnown RBP9.23□□□□□ -0.93
COL3A1-202ENST00000317840 OPN5Q6U736 354 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 RABEPKQ7Z6M1 372 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 DNASE2BQ8WZ79 361 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 DYRK2Q92630 601 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 GUCD1Q96NT3 240 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 SLC5A7Q9GZV3 580 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 IFT22Q9H7X7 185 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 PARPBPQ9NWS1 579 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 DOCK7Q96N67 2140 aa9.23□□□□□ -0.93
COL3A1-202ENST00000317840 IGKV1-9A0A0C4DH69 117 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 C5orf63A6NC05 138 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 IGHV3-9P01782 118 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 OR5AC1P0C628 307 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 CD79AP11912 226 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 DVL1P1P54792 670 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 DHRS7BQ6IAN0 325 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 RHBDD2Q6NTF9 364 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 DHRS11Q6UWP2 260 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF565Q8N9K5 539 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 PIGCQ92535 297 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 SPACA9Q96E40 222 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 USB1Q9BQ65 265 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 OCSTAMPQ9BR26 566 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 SPTAN1Q13813 2472 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 UMAD1C9J7I0 102 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 K7ESF4 209 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 NXPH3O95157 252 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 IGLV3-19P01714 112 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 PATE4P0C8F1 98 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 HKR1P10072 659 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 EIF1P41567 113 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 FHITP49789 147 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 RGS19P49795 217 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF529Q6P280 563 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 SLC22A25Q6T423 547 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF574Q6ZN55 896 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 SLC25A43Q8WUT9 341 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 PIGQQ9BRB3 760 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 PBDC1Q9BVG4 233 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 CARHSP1Q9Y2V2 147 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 DBX1A6NMT0 343 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 DHHO43323 396 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ARG1P05089 322 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 CD37P11049 281 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 UBE2V2Q15819 145 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 GUK1Q16774 197 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 AADACL3Q5VUY0 350 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 TMEM182Q6ZP80 229 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 MCEMP1Q8IX19 187 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF441Q8N8Z8 693 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 OR14K1Q8NGZ2 314 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 PP6455Q8WZ26 134 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF385AQ96PM9 386 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 UCN2Q96RP3 112 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 MRPL13Q9BYD1 178 aaKnown RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 NECAP2Q9NVZ3 263 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 GHRLQ9UBU3 117 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 SLC7A11Q9UPY5 501 aa9.22□□□□□ -0.93
COL3A1-202ENST00000317840 NCOA6Q14686 2063 aaPredicted RBP9.22□□□□□ -0.93
COL3A1-202ENST00000317840 HSPB6O14558 160 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 ZNF708P17019 499 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 SPEM2Q0P670 501 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 RTL6Q6ICC9 239 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 P4HA3Q7Z4N8 544 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 FAM24BQ8N5W8 94 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 POC1AQ8NBT0 407 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 OR6S1Q8NH40 331 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 NAA11Q9BSU3 229 aaPredicted RBP9.21□□□□□ -0.93
COL3A1-202ENST00000317840 RAB33BQ9H082 229 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 ANXA10Q9UJ72 324 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 LOXL2Q9Y4K0 774 aa9.21□□□□□ -0.93
COL3A1-202ENST00000317840 TMEM265A0A087WTH1 108 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 E5RGE8 158 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 ST8SIA3O43173 380 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 FAM157CP0CG43 387 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 PTAFRP25105 342 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 MPZP25189 248 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 GNRHRP30968 328 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 THBS4P35443 961 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 HTR5AP47898 357 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 ZNF133P52736 654 aaPredicted RBP9.21□□□□□ -0.94
COL3A1-202ENST00000317840 AWAT1Q58HT5 328 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 RPUSD3Q6P087 351 aaKnown RBP9.21□□□□□ -0.94
COL3A1-202ENST00000317840 LYZL2Q7Z4W2 148 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 TMEM217Q8N7C4 229 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 RASL10BQ96S79 203 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 NELFAQ9H3P2 528 aa9.21□□□□□ -0.94
COL3A1-202ENST00000317840 MCTS1Q9ULC4 181 aaKnown RBP9.21□□□□□ -0.94
COL3A1-202ENST00000317840 NSG2Q9Y328 171 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms