RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 EIF4EBP2Q13542 120 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-201ENST00000304636 ATG4DQ86TL0 474 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-201ENST00000304636 NAT8Q9UHE5 227 aa11.43□□□□□ -0.58
COL3A1-201ENST00000304636 YTHDF2Q9Y5A9 579 aaKnown RBP11.43□□□□□ -0.58
COL3A1-201ENST00000304636 MFSD2BA6NFX1 497 aa11.43□□□□□ -0.58
COL3A1-201ENST00000304636 HOXC4P09017 264 aaPredicted RBP11.43□□□□□ -0.58
COL3A1-201ENST00000304636 OR2V1Q8NHB1 315 aa11.43□□□□□ -0.58
COL3A1-201ENST00000304636 TRAV8-7A0A075B6U6 113 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 M0R143 59 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 NAAAQ02083 359 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 CBLN3Q6UW01 205 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 Q8IYB0 196 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 SCCPDHQ8NBX0 429 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 LIPGQ9Y5X9 500 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 DUXBA0A1W2PPF3 345 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 MPZL1O95297 269 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 HLA-DQB1P01920 261 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 PMCHP20382 165 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 LBX1P52954 281 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 GGTLC2Q14390 218 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TRIM61Q5EBN2 209 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 PACRGQ96M98 296 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 COMMD5Q9GZQ3 224 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TWSG1Q9GZX9 223 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 MBD1Q9UIS9 605 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TBX21Q9UL17 535 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 SIRT4Q9Y6E7 314 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 DAOP14920 347 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TMEM11P17152 192 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 RPL29P47914 159 aaKnown RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 CSRP3P50461 194 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 CD200R1LQ6Q8B3 271 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 C6orf15Q6UXA7 325 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TSEN54Q7Z6J9 526 aaKnown RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 C20orf196Q8IYI0 205 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 ANXA10Q9UJ72 324 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 AMDHD2Q9Y303 409 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 ANKRD34CP0C6C1 535 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 TCTEX1D1Q8N7M0 179 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 ALKBH3Q96Q83 286 aaPredicted RBP11.42□□□□□ -0.58
COL3A1-201ENST00000304636 RAB33BQ9H082 229 aa11.42□□□□□ -0.58
COL3A1-201ENST00000304636 ZFC3H1O60293 1989 aaKnown RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 SHISA8B8ZZ34 492 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 PNPP00491 289 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 NDUFB7P17568 137 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 RPS23P62266 143 aaKnown RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 LILRA6Q6PI73 481 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 LRRC61Q9BV99 259 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ERRFI1Q9UJM3 462 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 SCN9AQ15858 1988 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 TMEM30CPA0ZSE6 113 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 CDRT15L2A8MXV6 281 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 PTBP3O95758 552 aaKnown RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 KRASP01116 189 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ATP6V1FQ16864 119 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 C9orf152Q5JTZ5 239 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ASB10Q8WXI3 467 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ATOH1Q92858 354 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 FAM122AQ96E09 287 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 SIT1Q9Y3P8 196 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 C1QCP02747 245 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 CHRNB4P30926 498 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 GPR3P46089 330 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 DLK1P80370 383 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 BSXQ3C1V8 233 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 LAIR2Q6ISS4 152 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ASB5Q8WWX0 329 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 MRPS24Q96EL2 167 aaKnown RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ATP5SQ99766 215 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 SERGEFQ9UGK8 458 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ARFGEF1Q9Y6D6 1849 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 DSPPQ9NZW4 1301 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 SEC11BP0C7V7 166 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 LIMS1P48059 325 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 PSG6Q00889 435 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 TMEM240Q5SV17 173 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 FAM109BQ6ICB4 259 aaPredicted RBP11.41□□□□□ -0.58
COL3A1-201ENST00000304636 ANAPC16Q96DE5 110 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 CCDC74BQ96LY2 380 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 PRR13Q9NZ81 148 aa11.41□□□□□ -0.58
COL3A1-201ENST00000304636 A0A1W2PNV4 684 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 SOCS1O15524 211 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 HPP00738 406 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 DYNLT3P51808 116 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 GNG3P63215 75 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 LHX8Q68G74 356 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 LIAT1Q6ZQX7 453 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 PTX4Q96A99 478 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 NAT8BQ9UHF3 227 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 TRIP11Q15643 1979 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 IGHV3-64DA0A0J9YX35 117 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 PTP4A3O75365 173 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 VSIG10L2P0DP72 767 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 POLR2GP62487 172 aaKnown RBP eCLIP11.4□□□□□ -0.58
COL3A1-201ENST00000304636 ZNF383Q8NA42 475 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 ADAD2Q8NCV1 583 aaKnown RBP11.4□□□□□ -0.58
COL3A1-201ENST00000304636 OR8B12Q8NGG6 310 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 OR10V1Q8NGI7 309 aa11.4□□□□□ -0.58
COL3A1-201ENST00000304636 NOL4LQ96MY1 436 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms