RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 WNT16Q9UBV4 365 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 GREB1LQ9C091 1923 aaPredicted RBP9.56□□□□□ -0.88
CD44-201ENST00000263398 CYTIPO60759 359 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 NTN1O95631 604 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 FOSL1P15407 271 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 SRD5A2P31213 254 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 RPS16P62249 146 aaKnown RBP9.56□□□□□ -0.88
CD44-201ENST00000263398 ZNF816Q0VGE8 651 aaPredicted RBP9.56□□□□□ -0.88
CD44-201ENST00000263398 ZNF429Q86V71 674 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 OR2C3Q8N628 320 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 OPN4Q9UHM6 478 aa9.56□□□□□ -0.88
CD44-201ENST00000263398 ZNF107Q9UII5 783 aaPredicted RBP9.56□□□□□ -0.88
CD44-201ENST00000263398 M0R1B8 84 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 LY86O95711 162 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 HPXP02790 462 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SPP1P10451 314 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 BPIFB3P59826 476 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 IFITM3Q01628 133 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ARL16Q0P5N6 197 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 CLEC12BQ2HXU8 276 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 OR2A2Q6IF42 318 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SAT2Q96F10 170 aaPredicted RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 SLC52A3Q9NQ40 469 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SLC35D1Q9NTN3 355 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 UQCC1Q9NVA1 299 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ZNF320A2RRD8 509 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SHISA7A6NL88 538 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 K7EQS6 105 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 GPR37O15354 613 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 TOX3O15405 576 aaPredicted RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 MBTPS2O43462 519 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 NGFP01138 241 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 NTF3P20783 257 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 B3GNTL1Q67FW5 361 aaPredicted RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 OR5C1Q8NGR4 320 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 GINS3Q9BRX5 216 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SLC35B3Q9H1N7 401 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 TMEM9BQ9NQ34 198 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ALPK2Q86TB3 2170 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 UBE2L5PA0A1B0GUS4 154 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 OR5H15A6NDH6 313 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 DVL1O14640 695 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 NOVA1P51513 510 aaKnown RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 LSM6P62312 80 aaKnown RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 EIF3IQ13347 325 aaKnown RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 ZNF528Q3MIS6 628 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 SCMH1Q96GD3 660 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 CHRDL1Q9BU40 450 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ZNF426Q9BUY5 554 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 NMES1Q9C002 83 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ARRDC1-AS1Q9H2J1 176 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 FBXL17Q9UF56 701 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 CKAP5Q14008 2032 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ONECUT2O95948 504 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 CYC1P08574 325 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 RAC3P60763 192 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 PRDX4Q13162 271 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 FAM162BQ5T6X4 162 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 C9orf62Q8N4C0 152 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 OR8B12Q8NGG6 310 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 OR10D3Q8NH80 312 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ASB10Q8WXI3 467 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 ADAT1Q9BUB4 502 aaKnown RBP9.55□□□□□ -0.88
CD44-201ENST00000263398 NARFLQ9H6Q4 476 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 TAAR3PQ9P1P4 343 aa9.55□□□□□ -0.88
CD44-201ENST00000263398 TRGV10A0A0A0MS01 117 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 C3orf85A0A1B0GTC6 90 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CHEK1O14757 476 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 ADAM20O43506 726 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 ADAP1O75689 374 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 YIF1AO95070 293 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CRHP06850 196 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 NQO2P16083 231 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 EPHA8P29322 1005 aaPredicted RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 SIGLECL1Q8N7X8 197 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 PPP1R3EQ9H7J1 279 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 ZDHHC11Q9H8X9 412 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 WBP1LQ9NX94 342 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CES1P1Q9UKY3 287 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 SCN3AQ9NY46 2000 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 TRAV17A0A0B4J275 112 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CLDN34H7C241 214 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 HPP00738 406 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CLEC3BP05452 202 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 CTSDP07339 412 aaPredicted RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 INHBBP09529 407 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 INPP5JQ15735 1006 aaPredicted RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 WFDC8Q8IUA0 241 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 GPR137Q96N19 417 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 YBX2Q9Y2T7 364 aaKnown RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 GVINP1Q7Z2Y8 2422 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 LTBP1Q14766 1721 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 LIPT2A6NK58 231 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 H0Y8G0 127 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 OR5AC1P0C628 307 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 ZFP36L2P47974 494 aaKnown RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 SKP2Q13309 424 aa9.54□□□□□ -0.88
CD44-201ENST00000263398 KLF9Q13886 244 aaPredicted RBP9.54□□□□□ -0.88
CD44-201ENST00000263398 FAM109BQ6ICB4 259 aaPredicted RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms