RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 RIMS1Q86UR5 1692 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1B0GU03 582 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RBFOX2O43251 390 aaKnown RBP eCLIP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 STBD1O95210 358 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 CTSDP07339 412 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HTR1AP08908 422 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GNB3P16520 340 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SNRPD1P62314 119 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GRB2P62993 217 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PLPPR5Q32ZL2 321 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM244Q5VVB8 128 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MFSD12Q6NUT3 480 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HRCT1Q6UXD1 115 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 LRRC55Q6ZSA7 311 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 XYLT1Q86Y38 959 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ABHD4Q8TB40 342 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 WDR54Q9H977 334 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RBFOX1Q9NWB1 397 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 EML5Q05BV3 1969 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ARAP3Q8WWN8 1544 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ZC3H12DA2A288 527 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MPZL1O95297 269 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NUDT14O95848 222 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SCGB1C2P0DMR2 95 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FOXL1Q12952 345 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 VGLL4Q14135 290 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SLC35E3Q7Z769 313 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ACVR1CQ8NER5 493 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SMPDL3BQ92485 455 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HOXB13Q92826 284 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR10C1Q96KK4 312 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FBLN5Q9UBX5 448 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HECTD1Q9ULT8 2610 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 VCYO14598 125 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GAPDHP04406 335 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 EVI2AP22794 236 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ETV6P41212 452 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GATA4P43694 442 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 P2RY1P47900 373 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RAE1P78406 368 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR2T33Q8NG76 320 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 C1RLQ9NZP8 487 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PP18 115 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PQM1 296 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 FUT3P21217 361 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 WASP42768 502 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HBG1P69891 147 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 DLK1P80370 383 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MEF2DQ14814 521 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HLA-BQ31612 363 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MESTQ5EB52 335 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 STUMQ69YW2 141 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 DLK2Q6UY11 383 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 C6orf120Q7Z4R8 191 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SPRED2Q7Z698 418 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 VKORC1L1Q8N0U8 176 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR4K13Q8NH42 304 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SYNPRQ8TBG9 265 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 BRK1Q8WUW1 75 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NAT6Q93015 286 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RBKSQ9H477 322 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NMRAL1Q9HBL8 299 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PLB1Q6P1J6 1458 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GGT3PA6NGU5 568 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 CDC14BO60729 498 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 UMODP07911 640 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 WNT2P09544 360 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HBA1P69905 142 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ALG10BQ5I7T1 473 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PRSS36Q5K4E3 855 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NKAIN2Q5VXU1 208 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SCD5Q86SK9 330 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 S100A16Q96FQ6 103 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 RBM38Q9H0Z9 239 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 BEX4Q9NWD9 120 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TRAV39A0A0B4J263 110 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A0G2JLM5 398 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 KIR2DS5A0A0G2JLQ3 304 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A0G2JNG1 304 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 LOC102723971A0A1B0GUV8 181 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 AIFM1O95831 613 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 HPRT1P00492 218 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PCBP4P57723 403 aaKnown RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 SRPXP78539 464 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PSG4Q00888 419 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 KIR2DS5Q14953 304 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ACSF3Q4G176 576 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF66Q6ZN08 573 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 OR4C3Q8NH37 302 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 MAPKBP1O60336 1514 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 A0A087X1B8 175 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 GAGE12HA6NDE8 117 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 F6UB75 175 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 EMC8O43402 210 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM33P57088 247 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF791Q3KP31 576 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 DCAF4L1Q3SXM0 396 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 PYY3Q5JQD4 70 aa3.17□□□□□ -1.9
SCN1A-221ENST00000641996 ZMYND19Q96E35 227 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-221ENST00000641996 NPY6RQ99463 290 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms