RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SMAD2Q15796 467 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM240Q5SV17 173 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 HOGA1Q86XE5 327 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM183AQ8IXX5 376 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CDRT4Q8N9R6 151 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SMRP1Q8NCR6 262 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PRSS3P2Q8NHM4 247 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MUS81Q96NY9 551 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 STACQ99469 402 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FBXO34Q9NWN3 711 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MIOXQ9UGB7 285 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NOCTQ9UK39 431 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 A0A1W2PPQ1 181 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TCRBV7S2A1N4TA0A589 114 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 WTIPA6NIX2 430 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TAAR5O14804 337 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ARPC3O15145 178 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FBXO45P0C2W1 286 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZFP36L2P47974 494 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CEBPDP49716 269 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NHSL2Q5HYW2 709 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF787Q6DD87 383 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LINGO4Q6UY18 593 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF765Q7L2R6 523 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LHFPL4Q7Z7J7 247 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR51L1Q8NGJ5 315 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KHSRPQ92945 711 aaKnown RBP eCLIP2.52□□□□□ -2.012e-6■■■□□ 17.2
SCN1A-219ENST00000641575 PTPN18Q99952 460 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SMIM7Q9BQ49 75 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 RAB6CQ9H0N0 254 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KCNK12Q9HB15 430 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MARCH5Q9NX47 278 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ERRFI1Q9UJM3 462 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FBXL2Q9UKC9 423 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 UNC79Q9P2D8 2635 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TEP1Q99973 2627 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TMEM200CA6NKL6 621 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 C17orf105B2RV13 164 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NCR1O76036 304 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CD8AP01732 235 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MPC1LP0DKB6 136 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 DNAJB13P59910 316 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MBTPS1Q14703 1052 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 XKR7Q5GH72 579 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MDP1Q86V88 176 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NAXDQ8IW45 347 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KLHDC8AQ8IYD2 350 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MCHR2Q969V1 340 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KTI12Q96EK9 354 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 RAB33BQ9H082 229 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 NARFLQ9H6Q4 476 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ADAMTSL3P82987 1691 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PHIPQ8WWQ0 1821 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TRBV23-1A0A0A0MS06 115 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 H7C1H1 209 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CYR61O00622 381 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF623O75123 536 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC25A5P05141 298 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SLC35E2BP0CK96 405 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LHX2P50458 406 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ASCL1P50553 236 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 FAM3AP98173 230 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 RPEL1Q2QD12 228 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MPV17L2Q567V2 206 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TEX30Q5JUR7 227 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GLYATL3Q5SZD4 288 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MFSD12Q6NUT3 480 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TSPYL5Q86VY4 417 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR4C13Q8NGP0 309 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR51F2Q8NH61 342 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SCAMP4Q969E2 229 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 EID2BQ96D98 161 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ADTRPQ96IZ2 230 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MRPL37Q9BZE1 423 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR52A1Q9UKL2 312 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 MOKQ9UQ07 419 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ANKRD20A5PA0PJZ0 165 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ZNF724A8MTY0 619 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ISLRO14498 428 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OGG1O15527 345 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 BUD23O43709 281 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PITX3O75364 302 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR8G3PP0DMU2 310 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 SDHAP31040 664 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GABRA3P34903 492 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 APOBEC1P41238 236 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 BTG1P62324 171 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ADIPOQQ15848 244 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 Q56UQ5 140 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 LY6G5CQ5SRR4 150 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 DHRS4L2Q6PKH6 230 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 ANGPTL5Q86XS5 388 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CHST14Q8NCH0 376 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PURBQ96QR8 312 aaKnown RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 TSPAN32Q96QS1 320 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 GPR55Q9Y2T6 319 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 KLK5Q9Y337 293 aaPredicted RBP2.52□□□□□ -2.01
SCN1A-219ENST00000641575 PPIL1Q9Y3C6 166 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 CCL27Q9Y4X3 112 aa2.52□□□□□ -2.01
SCN1A-219ENST00000641575 OR5B21A6NL26 309 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms