RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZSCAN4Q8NAM6 433 aaPredicted RBP14.43□□□□□ -0.1
CLN3-252ENST00000636907 RAB3CQ96E17 227 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 Q96M66 194 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 IL36GQ9NZH8 169 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 ITPR1Q14643 2758 aa14.43□□□□□ -0.1
CLN3-252ENST00000636907 FCER2P06734 321 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 SFTPBP07988 381 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 GTF2F2P13984 249 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 HIST1H1DP16402 221 aaKnown RBP14.42□□□□□ -0.1
CLN3-252ENST00000636907 TUBG1P23258 451 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 SSBP1Q04837 148 aaKnown RBP14.42□□□□□ -0.1
CLN3-252ENST00000636907 IGFBP7Q16270 282 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 C1QTNF12Q5T7M4 302 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 PLET1Q6UQ28 207 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 SLC25A26Q70HW3 274 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 FJX1Q86VR8 437 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 ARHGAP5-AS1Q96IT6 56 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 TUBG2Q9NRH3 451 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 KCNK7Q9Y2U2 307 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 SPTA1P02549 2419 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 OR5B21A6NL26 309 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 CSF1P09603 554 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 CPT2P23786 658 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 OLFML2AQ68BL7 652 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 NUDCD2Q8WVJ2 157 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 UPRTQ96BW1 309 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 TAS2R8Q9NYW2 309 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 PURGQ9UJV8 347 aaKnown RBP14.42□□□□□ -0.1
CLN3-252ENST00000636907 FZR1Q9UM11 496 aa14.42□□□□□ -0.1
CLN3-252ENST00000636907 MFNGO00587 321 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 GSTP1P09211 210 aaKnown RBP14.41□□□□□ -0.1
CLN3-252ENST00000636907 GABRR1P24046 479 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 GIFP27352 417 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 BLVRBP30043 206 aaPredicted RBP14.41□□□□□ -0.1
CLN3-252ENST00000636907 NPBWR2P48146 333 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 CCR6P51684 374 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 ACTBP60709 375 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 GNG3P63215 75 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 ACTG1P63261 375 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 ZNF718Q3SXZ3 478 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 FAAP20Q6NZ36 180 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 TRAPPC6BQ86SZ2 158 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 C1orf174Q8IYL3 243 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 BATF2Q8N1L9 274 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 OR8S1Q8NH09 359 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 USB1Q9BQ65 265 aaKnown RBP14.41□□□□□ -0.1
CLN3-252ENST00000636907 DPAGT1Q9H3H5 408 aa14.41□□□□□ -0.1
CLN3-252ENST00000636907 NAP1L6A6NFF2 107 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 CCL21O00585 134 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 SSX5O60225 188 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 CRYAAP02489 173 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 KITLGP21583 273 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 FABP6P51161 128 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 RSBN1Q5VWQ0 802 aaPredicted RBP14.4□□□□□ -0.1
CLN3-252ENST00000636907 MBNL2Q5VZF2 373 aaKnown RBP14.4□□□□□ -0.1
CLN3-252ENST00000636907 SAXO1Q8IYX7 474 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 OSR2Q8N2R0 312 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 SLAMF9Q96A28 289 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 ADAT1Q9BUB4 502 aaKnown RBP14.4□□□□□ -0.1
CLN3-252ENST00000636907 CACNG6Q9BXT2 260 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 PECRQ9BY49 303 aa14.4□□□□□ -0.1
CLN3-252ENST00000636907 SYNGR1O43759 233 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 BCL3P20749 454 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 GCH1P30793 250 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 GNG2P59768 71 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 CARTPTQ16568 116 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 TAF9Q16594 264 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 PIGYQ3MUY2 71 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 SFRP4Q6FHJ7 346 aaPredicted RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 RGS7BPQ6MZT1 257 aaPredicted RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 HAGHLQ6PII5 290 aaPredicted RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 WDR86Q86TI4 376 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 ZNF573Q86YE8 665 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 FBXL14Q8N1E6 418 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 OR8G5Q8NG78 346 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 MRPS24Q96EL2 167 aaKnown RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 MICU1Q9BPX6 476 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 MARVELD1Q9BSK0 173 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 RTL8AQ9BWD3 113 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 OR51I2Q9H344 312 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 PCDHB16Q9NRJ7 776 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 NOP16Q9Y3C1 178 aaKnown RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 PKD1L2Q7Z442 2459 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 H0YL77 283 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 TIMM8AO60220 97 aaPredicted RBP14.39□□□□□ -0.11
CLN3-252ENST00000636907 PNLIPRP3Q17RR3 467 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 MSMPQ1L6U9 139 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 SIGIRRQ6IA17 410 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 TMEM200AQ86VY9 491 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 WFDC8Q8IUA0 241 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 GVQW1Q8N7I0 195 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 TMEM229BQ8NBD8 167 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 Q8NFD4 153 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 OR4D10Q8NGI6 311 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 OR4C16Q8NGL9 310 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 DEDD2Q8WXF8 326 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 CREB3L1Q96BA8 519 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 OR10A4Q9H209 315 aa14.39□□□□□ -0.11
CLN3-252ENST00000636907 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.39□□□□□ -0.11
CLN3-252ENST00000636907 MCUBQ9NWR8 336 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms