RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 KRT74Q7RTS7 529 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 LHFPL4Q7Z7J7 247 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 POC1AQ8NBT0 407 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 OR2T27Q8NH04 317 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 PIFOQ8TCI5 191 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 MROQ9BYG7 248 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 YIPF3Q9GZM5 350 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 ZNF556Q9HAH1 456 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 GPR173Q9NS66 373 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 GTF2A1LQ9UNN4 478 aa13.11□□□□□ -0.31
CLN3-246ENST00000636228 ACOD1A6NK06 481 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 OR5B21A6NL26 309 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 NRASP01111 189 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 PIPP12273 146 aaPredicted RBP13.1□□□□□ -0.31
CLN3-246ENST00000636228 HAAOP46952 286 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 GK3PQ14409 553 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 HABP2Q14520 560 aaPredicted RBP13.1□□□□□ -0.31
CLN3-246ENST00000636228 ZNF273Q14593 569 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 SNAPC1Q16533 368 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 BCDIN3DQ7Z5W3 292 aaKnown RBP13.1□□□□□ -0.31
CLN3-246ENST00000636228 DYNAPQ8N1N2 210 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 OR2T6Q8NHC8 308 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 THTPAQ9BU02 230 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 C1orf21Q9H246 121 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 HEXA-AS1Q9H8Q6 139 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 RASL12Q9NYN1 266 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 OR14J1Q9UGF5 321 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 ENPP5Q9UJA9 477 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 IKZF2Q9UKS7 526 aa13.1□□□□□ -0.31
CLN3-246ENST00000636228 SLC1A7O00341 560 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 IGLV3-1P01715 115 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 TTRP02766 147 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 OPN1MWP04001 364 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 PGA5P0DJD9 388 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 OPN1MW2P0DN77 364 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 OPN1MW3P0DN78 364 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 CALB2P22676 271 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 LGALS4P56470 323 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 ZNF684Q5T5D7 378 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 DEGS2Q6QHC5 323 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 PLEKHG7Q6ZR37 379 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 ASRGL1Q7L266 308 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 ZNF679Q8IYX0 411 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 OR5K1Q8NHB7 308 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 CFHR4Q92496 578 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 OR8B4Q96RC9 309 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 APOL4Q9BPW4 351 aa13.09□□□□□ -0.31
CLN3-246ENST00000636228 M0R129 80 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 ATP6V1B1P15313 513 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 RIDAP52758 137 aaKnown RBP13.08□□□□□ -0.32
CLN3-246ENST00000636228 ESRRGP62508 458 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 FAM189A2Q15884 450 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 SMIM21Q3B7S5 101 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 NSUN5P1Q3KNT7 163 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 SAMD5Q5TGI4 173 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 CCBE1Q6UXH8 406 aaPredicted RBP13.08□□□□□ -0.32
CLN3-246ENST00000636228 ANGPTL5Q86XS5 388 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 ZNF561Q8N587 486 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 SLC25A19Q9HC21 320 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 USE1Q9NZ43 259 aa13.08□□□□□ -0.32
CLN3-246ENST00000636228 NUFIP1Q9UHK0 495 aaKnown RBP13.08□□□□□ -0.32
CLN3-246ENST00000636228 H3BSH0 61 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 J3QT63 122 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 PRKYO43930 277 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 DHRS3O75911 302 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 INMTO95050 263 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 NXPH2O95156 264 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 TK1P04183 234 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 CD28P10747 220 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 ANXA8P13928 327 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 CRISP1P54107 249 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 CBX1P83916 185 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 ROM1Q03395 351 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 ZNF829Q3KNS6 432 aaPredicted RBP13.07□□□□□ -0.32
CLN3-246ENST00000636228 CLVS2Q5SYC1 327 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 SPATA24Q86W54 205 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 TMEM219Q86XT9 240 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 ZNF573Q86YE8 665 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 NRIP2Q9BQI9 281 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 TEX12Q9BXU0 123 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 NPFFR1Q9GZQ6 430 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 ZNF702PQ9H963 129 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 RAB18Q9NP72 206 aa13.07□□□□□ -0.32
CLN3-246ENST00000636228 A0A1B0GTI1 187 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 A0A1W2PPH5 198 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 PQLC2LA1A4F0 135 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 AQP12BA6NM10 295 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 ZNF254O75437 659 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 SRSF10O75494 262 aaKnown RBP13.06□□□□□ -0.32
CLN3-246ENST00000636228 JUNBP17275 347 aaPredicted RBP13.06□□□□□ -0.32
CLN3-246ENST00000636228 CXCR4P61073 352 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 AANATQ16613 207 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 ODF4Q2M2E3 257 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 FBLN7Q53RD9 439 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 OXLD1Q5BKU9 147 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 LDLRAD2Q5SZI1 272 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 ZBTB37Q5TC79 503 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 LCN1P1Q5VSP4 162 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 CALHM1Q8IU99 346 aa13.06□□□□□ -0.32
CLN3-246ENST00000636228 AQP12AQ8IXF9 295 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms