RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TGIF2Q9GZN2 237 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 KCNS2Q9ULS6 477 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 SRPK3Q9UPE1 567 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 RCL1Q9Y2P8 373 aaKnown RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 ZNF106Q9H2Y7 1883 aaKnown RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 ZNF217O75362 1048 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 PATE4P0C8F1 98 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 DUSP1P28562 367 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 GSK3AP49840 483 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 RPL23AP62750 156 aaKnown RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 RNF212Q495C1 297 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 CPNE4Q96A23 557 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 SPIN2AQ99865 258 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 SPIN2BQ9BPZ2 258 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 NIPSNAP3BQ9BS92 247 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 SLC2A8Q9NY64 477 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 FAM24AA6NFZ4 105 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 MSTNO14793 375 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 TSPAN2O60636 221 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 RAB11AP62491 216 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 FOXK1P85037 733 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 FBXL14Q8N1E6 418 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 MVB12AQ96EY5 273 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 FAM206AQ9NX38 181 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 LINC00587B1AMM8 73 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 MFNGO00587 321 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 F10P00742 488 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 IL2RAP01589 272 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 HPNP05981 417 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 KLK3P07288 261 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 PNLIPP16233 465 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 IGFBP3P17936 291 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 SPINK2P20155 84 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 IGLV3-21P80748 117 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 TLE1Q04724 770 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 CNN3Q15417 329 aaKnown RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 RTL6Q6ICC9 239 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 PIGQQ9BRB3 760 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 EDEM2Q9BV94 578 aa11.11□□□□□ -0.63
LIG1-221ENST00000613670 DUSP15Q9H1R2 295 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 MYOZ1Q9NP98 299 aaPredicted RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 ZMAT5Q9UDW3 170 aaKnown RBP11.11□□□□□ -0.63
LIG1-221ENST00000613670 LIPT2A6NK58 231 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 C5orf67F2Z3F1 127 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 TK1P04183 234 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 ISG15P05161 165 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SERPINE2P07093 398 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 RAB5AP20339 215 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SULT1A1P50225 295 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SLC35A1P78382 337 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 CLEC12BQ2HXU8 276 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 ASPHD2Q6ICH7 369 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 BEND4Q6ZU67 534 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SNIP1Q8TAD8 396 aaKnown RBP11.1□□□□□ -0.63
LIG1-221ENST00000613670 ZNF251Q9BRH9 671 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 MESP1Q9BRJ9 268 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 LILRA5A6NI73 299 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 PRR19A6NJB7 356 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 PPP1R2P9O14990 202 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 CCR5P51681 352 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 NHLH2Q02577 135 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 HIST2H3PS2Q5TEC6 136 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 C1QL2Q7Z5L3 287 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 ADAMTS17Q8TE56 1095 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 WBP1Q96G27 269 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 KCNK17Q96T54 332 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 TOLLIPQ9H0E2 274 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SLC34A2O95436 690 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 LY86O95711 162 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 HKR1P10072 659 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 ZNF133P52736 654 aaPredicted RBP11.1□□□□□ -0.63
LIG1-221ENST00000613670 SRYQ05066 204 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 ZNF266Q14584 549 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 OXGR1Q96P68 337 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 SLC35B3Q9H1N7 401 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 GNG13Q9P2W3 67 aa11.1□□□□□ -0.63
LIG1-221ENST00000613670 NSG1A0A0A6YYJ2 146 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 A0A1W2PQD3 144 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 ZNF705GA8MUZ8 300 aaPredicted RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 HSD17B6O14756 317 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 YIF1AO95070 293 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CD27P26842 260 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 PTGER4P35408 488 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 EIF2S3P41091 472 aaKnown RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 RBP2P50120 134 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 SULT1A2P50226 295 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 TMEM50BP56557 158 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 S100A12P80511 92 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 FAM166AQ6J272 317 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 LCN15Q6UWW0 184 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 C17orf78Q8N4C9 275 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 OR51H1Q8NH63 302 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 RNF166Q96A37 237 aaPredicted RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 MRPL38Q96DV4 380 aaKnown RBP11.09□□□□□ -0.63
LIG1-221ENST00000613670 MRGPRX4Q96LA9 322 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CFHR5Q9BXR6 569 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 ST3GAL6Q9Y274 331 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 TMEM14DPA8MWL7 114 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 CFIP05156 583 aa11.09□□□□□ -0.63
LIG1-221ENST00000613670 VAX1Q5SQQ9 334 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms