RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 SELENOFO60613 162 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 CCDC22O60826 627 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 ZNF737O75373 536 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 SOX14O95416 240 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 RBP4P02753 201 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 TK1P04183 234 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 AMY1AP04745 511 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 AMY2AP04746 511 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 ATP6V1B1P15313 513 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 ALOX5APP20292 161 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 HOXD3P31249 432 aaPredicted RBP4.88□□□□□ -1.63
VRK3-220ENST00000600259 MAP2K3P46734 347 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 HCCSP53701 268 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 PSMA6P60900 246 aaKnown RBP4.88□□□□□ -1.63
VRK3-220ENST00000600259 CEP78Q5JTW2 689 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 TMEM42Q69YG0 159 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 LCN8Q6JVE9 175 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 HAGHLQ6PII5 290 aaPredicted RBP4.88□□□□□ -1.63
VRK3-220ENST00000600259 ETV3LQ6ZN32 361 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 Q6ZSR3 168 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 FTMTQ8N4E7 242 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 ZNF561Q8N587 486 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 LINC00482Q8N8I6 264 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 AQP11Q8NBQ7 271 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 OR2T33Q8NG76 320 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 MYDGFQ969H8 173 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 RCC1LQ96I51 464 aaKnown RBP4.88□□□□□ -1.63
VRK3-220ENST00000600259 HIST1H2AAQ96QV6 131 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 TEAD3Q99594 435 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 NRIP2Q9BQI9 281 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 SPAG4Q9NPE6 437 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 FAM206AQ9NX38 181 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 MAGEL2Q9UJ55 1249 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 PITPNC1Q9UKF7 332 aa4.88□□□□□ -1.63
VRK3-220ENST00000600259 SACSQ9NZJ4 4579 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 A0A1B0GTI1 187 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 hCG_1809904A0A1W2PP81 198 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 A0A1W2PPE2 198 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 A0A1W2PPH5 198 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 A0A1W2PR64 198 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 A0A1W2PRV1 198 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 TCRBV5S2A0A599 114 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 PQLC2LA1A4F0 135 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 MEX3AA1L020 520 aaKnown RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 ACOD1A6NK06 481 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 OR5B21A6NL26 309 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 F8VVB4 439 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 F8VWA3 439 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 J3QT63 122 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 SRSF10O75494 262 aaKnown RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 CCNB2O95067 398 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 DUS4LO95620 317 aaKnown RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 IFNGP01579 166 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 ARG1P05089 322 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 LYNP07948 512 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 ZNF728P0DKX0 622 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 IGHV1-8P0DP01 117 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 SLC2A5P22732 501 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 MPZP25189 248 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 PRDX6P30041 224 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 VDAC2P45880 294 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 CAPZA1P52907 286 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 COL10A1Q03692 680 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 MICAQ29983 383 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 SAMD4BQ5PRF9 694 aaKnown RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 MINOS1Q5TGZ0 78 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 DEGS2Q6QHC5 323 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 CCDC121Q6ZUS5 278 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 MOB3CQ70IA8 216 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 CPLX4Q7Z7G2 160 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 CENPVQ7Z7K6 275 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 IQCF1Q8N6M8 205 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 OR13D1Q8NGV5 346 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 THEM6Q8WUY1 208 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 MCUR1Q96AQ8 359 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 FOXRED1Q96CU9 486 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 CMTM5Q96DZ9 223 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 NSMCE2Q96MF7 247 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 CDRT15Q96T59 188 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 NIPSNAP1Q9BPW8 284 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 OR51V1Q9H2C8 321 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 NIPAL2Q9H841 368 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 SEBOXQ9HB31 216 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 TBC1D23Q9NUY8 699 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 TAS2R1Q9NYW7 299 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 HHLA2Q9UM44 414 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 TSSC4Q9Y5U2 329 aaPredicted RBP4.87□□□□□ -1.63
VRK3-220ENST00000600259 MINOS1-NBL1R4GNA1 71 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 DNAH7Q8WXX0 4024 aa4.87□□□□□ -1.63
VRK3-220ENST00000600259 TCRBV4S1A1TA0A5B7 111 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 TMEM82A0PJX8 343 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 RIIAD1A6NNX1 92 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 SLC1A7O00341 560 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 GMNNO75496 209 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 MMP23AO75900 390 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 NRASP01111 189 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 TTRP02766 147 aa4.86□□□□□ -1.63
VRK3-220ENST00000600259 PIPP12273 146 aaPredicted RBP4.86□□□□□ -1.63
VRK3-220ENST00000600259 ZNF3P17036 446 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms